Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2355 and GFF2356 are separated by 6 nucleotides GFF2356 and GFF2357 overlap by 4 nucleotides
GFF2355 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 406,416 to 407,462
GFF2355
GFF2356 - RNase adapter protein RapZ, at 407,469 to 408,347
GFF2356
GFF2357 - DNA repair protein RecN, at 408,344 to 410,026
GFF2357
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.569 kb on + strand, within GFF2355 at 406.570 kb on - strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.662 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.665 kb on + strand, within GFF2355 at 406.666 kb on - strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.968 kb on + strand, within GFF2355 at 406.969 kb on - strand, within GFF2355 at 406.969 kb on - strand, within GFF2355 at 406.969 kb on - strand, within GFF2355 at 407.460 kb on + strand at 407.596 kb on + strand, within GFF2356 at 407.596 kb on + strand, within GFF2356 at 407.596 kb on + strand, within GFF2356 at 407.596 kb on + strand, within GFF2356 at 407.596 kb on + strand, within GFF2356 at 407.596 kb on + strand, within GFF2356 at 407.597 kb on - strand, within GFF2356 at 407.597 kb on - strand, within GFF2356 at 407.597 kb on - strand, within GFF2356 at 407.597 kb on - strand, within GFF2356 at 407.597 kb on - strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.659 kb on + strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.660 kb on - strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.743 kb on + strand, within GFF2356 at 407.744 kb on - strand, within GFF2356 at 407.744 kb on - strand, within GFF2356 at 407.744 kb on - strand, within GFF2356 at 407.779 kb on + strand, within GFF2356 at 407.779 kb on + strand, within GFF2356 at 407.779 kb on + strand, within GFF2356 at 407.780 kb on - strand, within GFF2356 at 407.780 kb on - strand, within GFF2356 at 407.780 kb on - strand, within GFF2356 at 407.780 kb on - strand, within GFF2356 at 407.780 kb on - strand, within GFF2356 at 407.872 kb on + strand, within GFF2356 at 407.872 kb on + strand, within GFF2356 at 407.872 kb on + strand, within GFF2356 at 407.872 kb on + strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 407.873 kb on - strand, within GFF2356 at 408.049 kb on + strand, within GFF2356 at 408.049 kb on + strand, within GFF2356 at 408.262 kb on + strand at 408.262 kb on + strand at 408.262 kb on + strand at 408.262 kb on + strand at 408.262 kb on + strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.265 kb on + strand at 408.266 kb on - strand at 408.266 kb on - strand at 408.809 kb on + strand, within GFF2357 at 408.810 kb on - strand, within GFF2357 at 408.810 kb on - strand, within GFF2357 at 408.972 kb on + strand, within GFF2357 at 408.972 kb on + strand, within GFF2357 at 408.972 kb on + strand, within GFF2357 at 408.972 kb on + strand, within GFF2357 at 408.972 kb on + strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 408.973 kb on - strand, within GFF2357 at 409.095 kb on + strand, within GFF2357 at 409.095 kb on + strand, within GFF2357 at 409.096 kb on - strand, within GFF2357
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 406,569 + GFF2355 0.15 +0.1 406,570 - GFF2355 0.15 -0.2 406,662 + GFF2355 0.23 -0.2 406,662 + GFF2355 0.23 -0.1 406,662 + GFF2355 0.23 +0.4 406,665 + GFF2355 0.24 +0.7 406,665 + GFF2355 0.24 +0.2 406,665 + GFF2355 0.24 -0.6 406,666 - GFF2355 0.24 -1.3 406,968 + GFF2355 0.53 -1.7 406,968 + GFF2355 0.53 -0.3 406,968 + GFF2355 0.53 -0.2 406,968 + GFF2355 0.53 -0.9 406,968 + GFF2355 0.53 -0.4 406,969 - GFF2355 0.53 -1.0 406,969 - GFF2355 0.53 +0.7 406,969 - GFF2355 0.53 +0.2 407,460 + -0.5 407,596 + GFF2356 0.14 -1.0 407,596 + GFF2356 0.14 -1.4 407,596 + GFF2356 0.14 -0.5 407,596 + GFF2356 0.14 -2.5 407,596 + GFF2356 0.14 -0.6 407,596 + GFF2356 0.14 -0.9 407,597 - GFF2356 0.15 +0.2 407,597 - GFF2356 0.15 -1.6 407,597 - GFF2356 0.15 -1.9 407,597 - GFF2356 0.15 -0.8 407,597 - GFF2356 0.15 -1.6 407,659 + GFF2356 0.22 -0.2 407,659 + GFF2356 0.22 -0.3 407,659 + GFF2356 0.22 -0.8 407,659 + GFF2356 0.22 -0.5 407,659 + GFF2356 0.22 -0.8 407,659 + GFF2356 0.22 -0.3 407,660 - GFF2356 0.22 -0.0 407,660 - GFF2356 0.22 +0.8 407,660 - GFF2356 0.22 +0.2 407,660 - GFF2356 0.22 -0.0 407,660 - GFF2356 0.22 -1.6 407,660 - GFF2356 0.22 -0.5 407,743 + GFF2356 0.31 -1.0 407,743 + GFF2356 0.31 -0.2 407,743 + GFF2356 0.31 +0.2 407,743 + GFF2356 0.31 -0.3 407,743 + GFF2356 0.31 +0.3 407,743 + GFF2356 0.31 +0.8 407,743 + GFF2356 0.31 -1.6 407,744 - GFF2356 0.31 -1.6 407,744 - GFF2356 0.31 +0.8 407,744 - GFF2356 0.31 +0.3 407,779 + GFF2356 0.35 -0.8 407,779 + GFF2356 0.35 -0.8 407,779 + GFF2356 0.35 -2.0 407,780 - GFF2356 0.35 -0.6 407,780 - GFF2356 0.35 -0.6 407,780 - GFF2356 0.35 -0.2 407,780 - GFF2356 0.35 -1.4 407,780 - GFF2356 0.35 -0.2 407,872 + GFF2356 0.46 -1.2 407,872 + GFF2356 0.46 -0.8 407,872 + GFF2356 0.46 -0.5 407,872 + GFF2356 0.46 -0.3 407,873 - GFF2356 0.46 -1.5 407,873 - GFF2356 0.46 -0.8 407,873 - GFF2356 0.46 +0.3 407,873 - GFF2356 0.46 -0.2 407,873 - GFF2356 0.46 -1.0 407,873 - GFF2356 0.46 +0.8 407,873 - GFF2356 0.46 -0.3 407,873 - GFF2356 0.46 -1.7 407,873 - GFF2356 0.46 -1.6 407,873 - GFF2356 0.46 -0.7 407,873 - GFF2356 0.46 -1.1 407,873 - GFF2356 0.46 -1.2 408,049 + GFF2356 0.66 +0.2 408,049 + GFF2356 0.66 -0.9 408,262 + -0.6 408,262 + -0.5 408,262 + -0.1 408,262 + -0.7 408,262 + -1.1 408,263 - +1.0 408,263 - -0.3 408,263 - -0.8 408,263 - +1.8 408,263 - -0.3 408,263 - -0.4 408,265 + -0.7 408,266 - +0.1 408,266 - -0.5 408,809 + GFF2357 0.28 +0.1 408,810 - GFF2357 0.28 -0.1 408,810 - GFF2357 0.28 +0.3 408,972 + GFF2357 0.37 +0.9 408,972 + GFF2357 0.37 +0.8 408,972 + GFF2357 0.37 -0.1 408,972 + GFF2357 0.37 -0.6 408,972 + GFF2357 0.37 -1.1 408,973 - GFF2357 0.37 -0.5 408,973 - GFF2357 0.37 -0.4 408,973 - GFF2357 0.37 -0.7 408,973 - GFF2357 0.37 +0.7 408,973 - GFF2357 0.37 -0.2 408,973 - GFF2357 0.37 -0.5 409,095 + GFF2357 0.45 +0.1 409,095 + GFF2357 0.45 +0.1 409,096 - GFF2357 0.45 -0.4
Or see this region's nucleotide sequence