Strain Fitness in Variovorax sp. SCN45 around GFF2268

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2266 and GFF2267 are separated by 90 nucleotidesGFF2267 and GFF2268 are separated by 100 nucleotidesGFF2268 and GFF2269 are separated by 70 nucleotides GFF2266 - FIG00441126: hypothetical protein, at 321,362 to 321,967 GFF2266 GFF2267 - Integral membrane protein, at 322,058 to 322,816 GFF2267 GFF2268 - Protein of unknown function DUF1428, at 322,917 to 323,276 GFF2268 GFF2269 - Uncharacterized MFS-type transporter, at 323,347 to 324,813 GFF2269 Position (kb) 322 323 324Strain fitness (log2 ratio) -2 -1 0 1at 321.920 kb on + strandat 321.966 kb on - strandat 322.008 kb on + strandat 322.085 kb on + strandat 322.085 kb on + strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.091 kb on + strandat 322.091 kb on + strandat 322.092 kb on - strandat 322.092 kb on - strandat 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.748 kb on + strandat 322.749 kb on - strandat 322.749 kb on - strandat 322.797 kb on - strandat 322.807 kb on + strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.162 kb on - strand, within GFF2268at 323.177 kb on - strand, within GFF2268at 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.263 kb on - strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.489 kb on + strandat 323.918 kb on + strand, within GFF2269at 323.918 kb on + strand, within GFF2269at 323.919 kb on - strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.272 kb on + strand, within GFF2269at 324.273 kb on - strand, within GFF2269at 324.273 kb on - strand, within GFF2269at 324.273 kb on - strand, within GFF2269

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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321,920 + -0.2
321,966 - -0.2
322,008 + -0.2
322,085 + -0.3
322,085 + -0.3
322,086 - -1.3
322,086 - -0.2
322,086 - -0.1
322,091 + +0.0
322,091 + +1.1
322,092 - +0.7
322,092 - +0.2
322,535 + GFF2267 0.63 +0.7
322,535 + GFF2267 0.63 -0.1
322,535 + GFF2267 0.63 -1.2
322,535 + GFF2267 0.63 -0.4
322,535 + GFF2267 0.63 -0.5
322,536 - GFF2267 0.63 -0.7
322,536 - GFF2267 0.63 -1.3
322,536 - GFF2267 0.63 +1.4
322,536 - GFF2267 0.63 +1.7
322,536 - GFF2267 0.63 +0.0
322,536 - GFF2267 0.63 -0.8
322,536 - GFF2267 0.63 +0.3
322,536 - GFF2267 0.63 -0.1
322,586 + GFF2267 0.70 -0.1
322,586 + GFF2267 0.70 -0.3
322,586 + GFF2267 0.70 -0.6
322,587 - GFF2267 0.70 -0.4
322,587 - GFF2267 0.70 -0.0
322,748 + +0.6
322,749 - -1.0
322,749 - +0.2
322,797 - -0.9
322,807 + -0.3
322,808 - -2.2
322,808 - +0.0
322,808 - -0.6
322,808 - -0.4
323,056 + GFF2268 0.39 +0.2
323,056 + GFF2268 0.39 -1.3
323,056 + GFF2268 0.39 -1.0
323,056 + GFF2268 0.39 +0.0
323,056 + GFF2268 0.39 -0.7
323,056 + GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 -0.6
323,057 - GFF2268 0.39 -1.2
323,057 - GFF2268 0.39 +1.4
323,057 - GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 -0.3
323,161 + GFF2268 0.68 -0.8
323,161 + GFF2268 0.68 -1.1
323,162 - GFF2268 0.68 -1.3
323,177 - GFF2268 0.72 +0.0
323,262 + -0.7
323,262 + -1.3
323,262 + -0.9
323,262 + -0.2
323,262 + -0.5
323,263 - -0.3
323,266 + +0.5
323,266 + -0.2
323,266 + -1.2
323,267 - +0.2
323,267 - +0.2
323,267 - -0.2
323,489 + -1.1
323,918 + GFF2269 0.39 +0.6
323,918 + GFF2269 0.39 +0.0
323,919 - GFF2269 0.39 +0.4
323,939 + GFF2269 0.40 -1.1
323,939 + GFF2269 0.40 -0.3
323,939 + GFF2269 0.40 -2.1
323,939 + GFF2269 0.40 +0.7
323,940 - GFF2269 0.40 -0.5
323,940 - GFF2269 0.40 -0.2
323,940 - GFF2269 0.40 +0.1
324,164 + GFF2269 0.56 -0.7
324,164 + GFF2269 0.56 -0.6
324,164 + GFF2269 0.56 +1.7
324,165 - GFF2269 0.56 -0.3
324,165 - GFF2269 0.56 +0.6
324,165 - GFF2269 0.56 -0.7
324,165 - GFF2269 0.56 +0.6
324,165 - GFF2269 0.56 -0.3
324,272 + GFF2269 0.63 -0.4
324,273 - GFF2269 0.63 -0.1
324,273 - GFF2269 0.63 -0.2
324,273 - GFF2269 0.63 +0.2

Or see this region's nucleotide sequence