Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2255 and GFF2256 are separated by 16 nucleotides GFF2256 and GFF2257 overlap by 8 nucleotides GFF2257 and GFF2258 are separated by 96 nucleotides
GFF2255 - Ribonuclease Z (EC 3.1.26.11), at 310,457 to 311,413
GFF2255
GFF2256 - Uncharacterized protein YcgL, at 311,430 to 312,281
GFF2256
GFF2257 - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4), at 312,274 to 313,311
GFF2257
GFF2258 - 4-hydroxybenzoate transporter, at 313,408 to 314,766
GFF2258
Position (kb) 312
313
314 Strain fitness (log2 ratio) -1
0
1 at 311.330 kb on + strand at 311.369 kb on + strand at 311.613 kb on + strand, within GFF2256 at 311.634 kb on + strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.862 kb on + strand, within GFF2256 at 311.863 kb on - strand, within GFF2256 at 311.928 kb on + strand, within GFF2256 at 311.929 kb on - strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.935 kb on - strand, within GFF2256 at 312.222 kb on + strand at 312.526 kb on + strand, within GFF2257 at 312.526 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 313.382 kb on - strand at 313.487 kb on - strand at 313.844 kb on - strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.258 kb on - strand, within GFF2258 at 314.258 kb on - strand, within GFF2258
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 311,330 + -0.4 311,369 + +0.7 311,613 + GFF2256 0.21 -0.6 311,634 + GFF2256 0.24 -0.3 311,635 - GFF2256 0.24 +1.3 311,635 - GFF2256 0.24 -0.3 311,862 + GFF2256 0.51 -0.7 311,863 - GFF2256 0.51 -0.2 311,928 + GFF2256 0.58 +1.1 311,929 - GFF2256 0.59 -1.5 311,934 + GFF2256 0.59 -0.8 311,934 + GFF2256 0.59 -0.3 311,935 - GFF2256 0.59 -0.3 312,222 + +0.5 312,526 + GFF2257 0.24 +0.7 312,526 + GFF2257 0.24 +0.6 312,997 + GFF2257 0.70 -0.2 312,997 + GFF2257 0.70 +0.9 313,382 - -0.4 313,487 - +0.2 313,844 - GFF2258 0.32 -1.4 314,257 + GFF2258 0.62 -0.0 314,257 + GFF2258 0.62 -0.2 314,257 + GFF2258 0.62 -0.8 314,257 + GFF2258 0.62 +0.4 314,257 + GFF2258 0.62 +0.0 314,257 + GFF2258 0.62 -0.8 314,258 - GFF2258 0.63 +1.3 314,258 - GFF2258 0.63 -0.2
Or see this region's nucleotide sequence