Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2195 and GFF2196 are separated by 198 nucleotides GFF2196 and GFF2197 are separated by 24 nucleotides GFF2197 and GFF2198 are separated by 28 nucleotides
GFF2195 - FIG00732904: hypothetical protein, at 253,431 to 256,526
GFF2195
GFF2196 - no description, at 256,725 to 256,871
GFF2196
GFF2197 - Type I secretion system ATPase, LssB family LapB, at 256,896 to 258,713
GFF2197
GFF2198 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 258,742 to 260,058
GFF2198
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.159 kb on - strand, within GFF2195 at 256.159 kb on - strand, within GFF2195 at 256.160 kb on - strand, within GFF2195 at 256.553 kb on + strand at 256.785 kb on + strand, within GFF2196 at 256.785 kb on + strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.833 kb on + strand, within GFF2196 at 256.834 kb on - strand, within GFF2196 at 256.855 kb on - strand, within GFF2196 at 257.082 kb on + strand, within GFF2197 at 257.083 kb on - strand, within GFF2197 at 257.083 kb on - strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.308 kb on - strand, within GFF2197 at 257.308 kb on - strand, within GFF2197 at 257.625 kb on + strand, within GFF2197 at 257.626 kb on - strand, within GFF2197 at 257.626 kb on - strand, within GFF2197 at 258.105 kb on + strand, within GFF2197 at 258.105 kb on + strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.106 kb on - strand, within GFF2197 at 258.142 kb on - strand, within GFF2197 at 258.142 kb on - strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.189 kb on + strand, within GFF2197 at 258.190 kb on - strand, within GFF2197 at 258.190 kb on - strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.207 kb on + strand, within GFF2197 at 258.208 kb on - strand, within GFF2197 at 258.570 kb on + strand at 258.571 kb on - strand at 258.571 kb on - strand at 258.764 kb on + strand at 258.764 kb on + strand at 258.764 kb on + strand at 258.765 kb on - strand at 259.070 kb on - strand, within GFF2198 at 259.505 kb on - strand, within GFF2198
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 256,159 - GFF2195 0.88 +2.1 256,159 - GFF2195 0.88 +1.4 256,160 - GFF2195 0.88 -0.5 256,553 + -0.0 256,785 + GFF2196 0.41 -0.5 256,785 + GFF2196 0.41 -0.6 256,786 - GFF2196 0.41 -0.1 256,786 - GFF2196 0.41 +0.1 256,786 - GFF2196 0.41 -0.1 256,786 - GFF2196 0.41 +0.4 256,786 - GFF2196 0.41 -1.4 256,833 + GFF2196 0.73 -0.7 256,834 - GFF2196 0.74 +0.1 256,855 - GFF2196 0.88 -0.7 257,082 + GFF2197 0.10 -0.5 257,083 - GFF2197 0.10 -1.7 257,083 - GFF2197 0.10 -0.8 257,307 + GFF2197 0.23 +1.1 257,307 + GFF2197 0.23 -0.4 257,307 + GFF2197 0.23 -0.5 257,308 - GFF2197 0.23 +0.4 257,308 - GFF2197 0.23 -0.5 257,625 + GFF2197 0.40 +0.4 257,626 - GFF2197 0.40 -0.5 257,626 - GFF2197 0.40 +0.1 258,105 + GFF2197 0.67 -0.1 258,105 + GFF2197 0.67 -0.7 258,106 - GFF2197 0.67 -0.9 258,106 - GFF2197 0.67 +0.4 258,106 - GFF2197 0.67 -0.4 258,142 - GFF2197 0.69 -0.2 258,142 - GFF2197 0.69 +1.4 258,189 + GFF2197 0.71 -0.5 258,189 + GFF2197 0.71 -0.3 258,189 + GFF2197 0.71 -1.0 258,189 + GFF2197 0.71 -0.6 258,190 - GFF2197 0.71 +0.0 258,190 - GFF2197 0.71 -1.9 258,207 + GFF2197 0.72 +0.5 258,207 + GFF2197 0.72 -2.7 258,207 + GFF2197 0.72 -0.2 258,208 - GFF2197 0.72 -0.7 258,570 + +1.2 258,571 - -0.6 258,571 - +0.3 258,764 + -0.5 258,764 + -0.4 258,764 + -0.2 258,765 - -0.1 259,070 - GFF2198 0.25 -0.4 259,505 - GFF2198 0.58 -0.1
Or see this region's nucleotide sequence