Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2169 and GFF2170 are separated by 20 nucleotides GFF2170 and GFF2171 are separated by 34 nucleotides GFF2171 and GFF2172 are separated by 73 nucleotides GFF2172 and GFF2173 are separated by 12 nucleotides
GFF2169 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222,832 to 224,622
GFF2169
GFF2170 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 224,643 to 225,353
GFF2170
GFF2171 - MBL-fold metallohydrolase SPO0683, at 225,388 to 226,356
GFF2171
GFF2172 - Permease of the drug/metabolite transporter (DMT) superfamily, at 226,430 to 227,302
GFF2172
GFF2173 - no description, at 227,315 to 228,502
GFF2173
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.500 kb on + strand at 224.566 kb on + strand at 224.673 kb on + strand at 224.673 kb on + strand at 224.946 kb on + strand, within GFF2170 at 225.259 kb on - strand, within GFF2170 at 225.259 kb on - strand, within GFF2170 at 225.473 kb on - strand at 225.473 kb on - strand at 225.610 kb on + strand, within GFF2171 at 225.610 kb on + strand, within GFF2171 at 225.611 kb on - strand, within GFF2171 at 225.611 kb on - strand, within GFF2171 at 225.629 kb on - strand, within GFF2171 at 225.661 kb on + strand, within GFF2171 at 225.706 kb on + strand, within GFF2171 at 225.706 kb on + strand, within GFF2171 at 225.706 kb on + strand, within GFF2171 at 225.706 kb on + strand, within GFF2171 at 225.707 kb on - strand, within GFF2171 at 225.707 kb on - strand, within GFF2171 at 225.707 kb on - strand, within GFF2171 at 225.707 kb on - strand, within GFF2171 at 225.916 kb on + strand, within GFF2171 at 225.977 kb on - strand, within GFF2171 at 225.991 kb on + strand, within GFF2171 at 225.992 kb on - strand, within GFF2171 at 226.135 kb on + strand, within GFF2171 at 226.136 kb on - strand, within GFF2171 at 226.187 kb on - strand, within GFF2171 at 226.187 kb on - strand, within GFF2171 at 226.187 kb on - strand, within GFF2171 at 226.219 kb on + strand, within GFF2171 at 226.219 kb on + strand, within GFF2171 at 226.219 kb on + strand, within GFF2171 at 226.220 kb on - strand, within GFF2171 at 226.220 kb on - strand, within GFF2171 at 226.274 kb on - strand at 226.291 kb on + strand at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.964 kb on + strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.965 kb on - strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.996 kb on + strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 226.997 kb on - strand, within GFF2172 at 227.160 kb on - strand, within GFF2172 at 227.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 224,500 + -0.2 224,566 + -0.7 224,673 + -0.0 224,673 + -0.6 224,946 + GFF2170 0.43 +0.1 225,259 - GFF2170 0.87 -0.5 225,259 - GFF2170 0.87 -0.3 225,473 - +0.7 225,473 - -0.3 225,610 + GFF2171 0.23 +0.2 225,610 + GFF2171 0.23 -0.5 225,611 - GFF2171 0.23 -0.4 225,611 - GFF2171 0.23 +1.2 225,629 - GFF2171 0.25 -0.1 225,661 + GFF2171 0.28 -0.8 225,706 + GFF2171 0.33 +0.0 225,706 + GFF2171 0.33 +0.5 225,706 + GFF2171 0.33 -0.9 225,706 + GFF2171 0.33 -0.6 225,707 - GFF2171 0.33 +0.4 225,707 - GFF2171 0.33 -0.6 225,707 - GFF2171 0.33 -1.3 225,707 - GFF2171 0.33 -1.1 225,916 + GFF2171 0.54 -0.4 225,977 - GFF2171 0.61 -0.4 225,991 + GFF2171 0.62 -0.8 225,992 - GFF2171 0.62 -0.3 226,135 + GFF2171 0.77 +0.2 226,136 - GFF2171 0.77 -0.7 226,187 - GFF2171 0.82 -1.6 226,187 - GFF2171 0.82 -1.1 226,187 - GFF2171 0.82 -0.6 226,219 + GFF2171 0.86 +0.0 226,219 + GFF2171 0.86 -1.1 226,219 + GFF2171 0.86 +0.5 226,220 - GFF2171 0.86 -0.6 226,220 - GFF2171 0.86 +0.2 226,274 - -0.5 226,291 + -1.0 226,964 + GFF2172 0.61 -0.4 226,964 + GFF2172 0.61 +0.5 226,964 + GFF2172 0.61 -0.5 226,964 + GFF2172 0.61 -0.5 226,964 + GFF2172 0.61 -1.3 226,964 + GFF2172 0.61 +0.4 226,964 + GFF2172 0.61 -1.5 226,964 + GFF2172 0.61 -0.3 226,965 - GFF2172 0.61 -0.3 226,965 - GFF2172 0.61 -0.4 226,965 - GFF2172 0.61 -0.4 226,965 - GFF2172 0.61 -1.1 226,965 - GFF2172 0.61 +0.1 226,996 + GFF2172 0.65 -0.2 226,996 + GFF2172 0.65 -1.3 226,996 + GFF2172 0.65 -1.0 226,997 - GFF2172 0.65 -0.5 226,997 - GFF2172 0.65 -0.8 226,997 - GFF2172 0.65 -0.2 227,160 - GFF2172 0.84 -0.3 227,288 - -1.1
Or see this region's nucleotide sequence