Strain Fitness in Variovorax sp. SCN45 around GFF2106

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2105 and GFF2106 are separated by 78 nucleotidesGFF2106 and GFF2107 are separated by 32 nucleotidesGFF2107 and GFF2108 overlap by 4 nucleotides GFF2105 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 155,309 to 156,487 GFF2105 GFF2106 - hypothetical protein, at 156,566 to 157,726 GFF2106 GFF2107 - no description, at 157,759 to 158,112 GFF2107 GFF2108 - hypothetical protein, at 158,109 to 159,125 GFF2108 Position (kb) 156 157 158Strain fitness (log2 ratio) -1 0 1at 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.723 kb on + strand, within GFF2105at 155.804 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.834 kb on + strand, within GFF2105at 155.835 kb on - strand, within GFF2105at 155.901 kb on + strand, within GFF2105at 155.902 kb on - strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.245 kb on + strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.246 kb on - strand, within GFF2105at 156.506 kb on + strandat 156.547 kb on + strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.548 kb on - strandat 156.554 kb on + strandat 156.554 kb on + strandat 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.755 kb on + strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.756 kb on - strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.818 kb on + strand, within GFF2106at 156.819 kb on - strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 156.998 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.148 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.160 kb on + strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.161 kb on - strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.235 kb on + strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.236 kb on - strand, within GFF2106at 157.679 kb on + strandat 157.680 kb on - strandat 157.680 kb on - strandat 157.808 kb on + strand, within GFF2107at 157.808 kb on + strand, within GFF2107at 157.808 kb on + strand, within GFF2107at 157.809 kb on - strand, within GFF2107at 157.847 kb on - strand, within GFF2107at 158.097 kb on - strandat 158.509 kb on + strand, within GFF2108at 158.526 kb on - strand, within GFF2108at 158.720 kb on - strand, within GFF2108at 158.720 kb on - strand, within GFF2108

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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155,723 + GFF2105 0.35 +0.7
155,723 + GFF2105 0.35 -0.5
155,723 + GFF2105 0.35 -0.3
155,804 + GFF2105 0.42 -0.2
155,834 + GFF2105 0.45 -1.3
155,834 + GFF2105 0.45 +0.2
155,835 - GFF2105 0.45 -0.3
155,901 + GFF2105 0.50 +1.4
155,902 - GFF2105 0.50 -0.4
156,245 + GFF2105 0.79 +0.0
156,245 + GFF2105 0.79 -1.3
156,246 - GFF2105 0.79 -0.1
156,246 - GFF2105 0.79 -0.7
156,246 - GFF2105 0.79 -0.5
156,246 - GFF2105 0.79 +0.2
156,506 + +1.7
156,547 + -0.5
156,548 - -0.3
156,548 - -0.6
156,548 - +0.0
156,548 - -0.6
156,554 + -0.7
156,554 + -0.1
156,755 + GFF2106 0.16 -0.7
156,755 + GFF2106 0.16 -0.5
156,755 + GFF2106 0.16 +0.0
156,755 + GFF2106 0.16 +0.4
156,755 + GFF2106 0.16 -0.2
156,755 + GFF2106 0.16 -1.6
156,756 - GFF2106 0.16 +0.0
156,756 - GFF2106 0.16 -1.1
156,756 - GFF2106 0.16 +0.3
156,756 - GFF2106 0.16 +0.0
156,756 - GFF2106 0.16 -1.4
156,756 - GFF2106 0.16 -0.6
156,756 - GFF2106 0.16 -0.6
156,756 - GFF2106 0.16 -0.6
156,756 - GFF2106 0.16 +0.4
156,756 - GFF2106 0.16 +0.5
156,818 + GFF2106 0.22 -0.1
156,818 + GFF2106 0.22 +0.3
156,818 + GFF2106 0.22 -0.3
156,818 + GFF2106 0.22 -0.7
156,819 - GFF2106 0.22 -1.2
156,998 + GFF2106 0.37 -0.8
156,998 + GFF2106 0.37 +0.6
156,998 + GFF2106 0.37 +0.3
156,998 + GFF2106 0.37 +0.6
156,998 + GFF2106 0.37 -0.1
157,148 + GFF2106 0.50 -0.3
157,148 + GFF2106 0.50 -0.8
157,148 + GFF2106 0.50 +0.4
157,160 + GFF2106 0.51 -1.4
157,160 + GFF2106 0.51 -0.9
157,160 + GFF2106 0.51 -1.2
157,160 + GFF2106 0.51 -0.6
157,160 + GFF2106 0.51 -1.2
157,160 + GFF2106 0.51 -0.7
157,160 + GFF2106 0.51 +1.0
157,160 + GFF2106 0.51 -0.2
157,160 + GFF2106 0.51 -0.3
157,160 + GFF2106 0.51 +0.2
157,161 - GFF2106 0.51 -1.6
157,161 - GFF2106 0.51 -0.3
157,161 - GFF2106 0.51 +0.7
157,161 - GFF2106 0.51 -0.1
157,235 + GFF2106 0.58 -1.0
157,235 + GFF2106 0.58 -1.5
157,236 - GFF2106 0.58 +0.1
157,236 - GFF2106 0.58 +1.0
157,236 - GFF2106 0.58 +1.3
157,236 - GFF2106 0.58 -0.8
157,679 + +0.3
157,680 - +0.4
157,680 - +0.3
157,808 + GFF2107 0.14 -0.9
157,808 + GFF2107 0.14 +0.7
157,808 + GFF2107 0.14 +1.0
157,809 - GFF2107 0.14 +0.1
157,847 - GFF2107 0.25 +1.2
158,097 - -1.7
158,509 + GFF2108 0.39 -0.1
158,526 - GFF2108 0.41 -0.3
158,720 - GFF2108 0.60 -0.3
158,720 - GFF2108 0.60 -0.8

Or see this region's nucleotide sequence