Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2050 and GFF2051 are separated by 156 nucleotides GFF2051 and GFF2052 are separated by 142 nucleotides GFF2052 and GFF2053 are separated by 319 nucleotides
GFF2050 - hypothetical protein, at 97,930 to 98,430
GFF2050
GFF2051 - FIG00463476: hypothetical protein, at 98,587 to 99,234
GFF2051
GFF2052 - hypothetical protein, at 99,377 to 101,494
GFF2052
GFF2053 - Adenosylhomocysteinase (EC 3.3.1.1), at 101,814 to 103,253
GFF2053
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.505 kb on + strand at 98.506 kb on - strand at 98.578 kb on - strand at 98.578 kb on - strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.956 kb on - strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.304 kb on + strand at 99.304 kb on + strand at 99.305 kb on - strand at 99.588 kb on + strand at 99.588 kb on + strand at 99.588 kb on + strand at 99.589 kb on - strand, within GFF2052 at 99.589 kb on - strand, within GFF2052 at 99.589 kb on - strand, within GFF2052 at 99.589 kb on - strand, within GFF2052 at 99.589 kb on - strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.735 kb on + strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.736 kb on - strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.843 kb on + strand, within GFF2052 at 99.844 kb on - strand, within GFF2052 at 99.844 kb on - strand, within GFF2052 at 99.844 kb on - strand, within GFF2052 at 99.882 kb on + strand, within GFF2052 at 99.883 kb on - strand, within GFF2052 at 99.883 kb on - strand, within GFF2052 at 99.883 kb on - strand, within GFF2052 at 99.883 kb on - strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.906 kb on + strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.907 kb on - strand, within GFF2052 at 99.993 kb on + strand, within GFF2052 at 99.993 kb on + strand, within GFF2052 at 99.993 kb on + strand, within GFF2052 at 99.994 kb on - strand, within GFF2052 at 99.994 kb on - strand, within GFF2052 at 99.994 kb on - strand, within GFF2052 at 100.059 kb on + strand, within GFF2052 at 100.059 kb on + strand, within GFF2052 at 100.059 kb on + strand, within GFF2052 at 100.060 kb on - strand, within GFF2052 at 100.060 kb on - strand, within GFF2052 at 100.060 kb on - strand, within GFF2052 at 100.060 kb on - strand, within GFF2052 at 100.248 kb on + strand, within GFF2052 at 100.249 kb on - strand, within GFF2052 at 100.302 kb on + strand, within GFF2052 at 100.302 kb on + strand, within GFF2052 at 100.302 kb on + strand, within GFF2052 at 100.303 kb on - strand, within GFF2052 at 100.303 kb on - strand, within GFF2052 at 100.311 kb on + strand, within GFF2052 at 100.311 kb on + strand, within GFF2052 at 100.311 kb on + strand, within GFF2052 at 100.311 kb on + strand, within GFF2052 at 100.312 kb on - strand, within GFF2052 at 100.312 kb on - strand, within GFF2052 at 100.312 kb on - strand, within GFF2052 at 100.312 kb on - strand, within GFF2052 at 100.368 kb on + strand, within GFF2052 at 100.368 kb on + strand, within GFF2052 at 100.369 kb on - strand, within GFF2052 at 100.369 kb on - strand, within GFF2052 at 100.369 kb on - strand, within GFF2052 at 100.369 kb on - strand, within GFF2052 at 100.369 kb on - strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.434 kb on + strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.435 kb on - strand, within GFF2052 at 100.521 kb on + strand, within GFF2052 at 100.521 kb on + strand, within GFF2052 at 100.521 kb on + strand, within GFF2052 at 100.521 kb on + strand, within GFF2052 at 100.521 kb on + strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.522 kb on - strand, within GFF2052 at 100.547 kb on - strand, within GFF2052 at 100.699 kb on - strand, within GFF2052 at 100.803 kb on + strand, within GFF2052 at 100.804 kb on - strand, within GFF2052 at 100.842 kb on + strand, within GFF2052 at 100.842 kb on + strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.843 kb on - strand, within GFF2052 at 100.956 kb on + strand, within GFF2052 at 100.956 kb on + strand, within GFF2052 at 100.956 kb on + strand, within GFF2052 at 100.956 kb on + strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 100.957 kb on - strand, within GFF2052 at 101.040 kb on + strand, within GFF2052 at 101.040 kb on + strand, within GFF2052 at 101.137 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.139 kb on + strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.140 kb on - strand, within GFF2052 at 101.211 kb on + strand, within GFF2052 at 101.265 kb on + strand, within GFF2052 at 101.265 kb on + strand, within GFF2052 at 101.265 kb on + strand, within GFF2052 at 101.265 kb on + strand, within GFF2052 at 101.266 kb on - strand, within GFF2052 at 101.266 kb on - strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.274 kb on + strand, within GFF2052 at 101.275 kb on - strand, within GFF2052 at 101.275 kb on - strand, within GFF2052 at 101.478 kb on + strand at 101.478 kb on + strand at 101.478 kb on + strand at 101.478 kb on + strand at 101.479 kb on - strand at 101.479 kb on - strand at 101.479 kb on - strand at 101.479 kb on - strand at 101.479 kb on - strand at 101.571 kb on - strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 98,505 + -0.0 98,506 - +0.2 98,578 - -0.2 98,578 - +0.2 98,588 + +1.3 98,588 + -0.1 98,588 + -1.1 98,588 + -0.4 98,588 + +0.4 98,588 + -0.8 98,588 + -0.5 98,588 + -1.1 98,589 - -0.4 98,589 - -0.2 98,589 - -0.5 98,589 - -0.6 98,589 - -0.4 98,589 - -1.1 98,589 - -0.6 98,589 - -1.3 98,768 + GFF2051 0.28 +0.4 98,768 + GFF2051 0.28 -0.5 98,768 + GFF2051 0.28 -0.6 98,768 + GFF2051 0.28 -1.3 98,768 + GFF2051 0.28 +1.0 98,768 + GFF2051 0.28 +0.1 98,769 - GFF2051 0.28 -0.5 98,769 - GFF2051 0.28 -0.8 98,769 - GFF2051 0.28 -0.4 98,769 - GFF2051 0.28 +1.2 98,769 - GFF2051 0.28 -0.1 98,769 - GFF2051 0.28 -0.5 98,769 - GFF2051 0.28 -0.5 98,956 - GFF2051 0.57 +0.0 99,008 + GFF2051 0.65 +0.5 99,008 + GFF2051 0.65 -0.5 99,008 + GFF2051 0.65 +0.7 99,009 - GFF2051 0.65 -1.0 99,009 - GFF2051 0.65 +0.6 99,009 - GFF2051 0.65 -0.2 99,269 + -2.1 99,269 + +0.0 99,269 + -1.2 99,269 + -1.1 99,269 + -0.3 99,269 + -1.1 99,269 + +0.7 99,269 + -0.4 99,269 + +0.0 99,269 + +0.2 99,270 - -1.1 99,270 - -1.5 99,270 - -0.5 99,270 - -0.2 99,270 - +0.1 99,304 + -0.3 99,304 + -3.0 99,305 - +1.4 99,588 + -0.1 99,588 + -0.8 99,588 + -1.1 99,589 - GFF2052 0.10 +1.2 99,589 - GFF2052 0.10 +0.1 99,589 - GFF2052 0.10 -0.7 99,589 - GFF2052 0.10 +0.1 99,589 - GFF2052 0.10 -0.2 99,735 + GFF2052 0.17 +0.0 99,735 + GFF2052 0.17 -0.6 99,735 + GFF2052 0.17 -1.1 99,735 + GFF2052 0.17 +0.0 99,735 + GFF2052 0.17 -0.1 99,735 + GFF2052 0.17 +0.2 99,736 - GFF2052 0.17 -1.2 99,736 - GFF2052 0.17 -0.2 99,736 - GFF2052 0.17 +0.7 99,736 - GFF2052 0.17 +1.5 99,736 - GFF2052 0.17 +0.7 99,736 - GFF2052 0.17 -0.3 99,843 + GFF2052 0.22 +0.7 99,843 + GFF2052 0.22 +0.6 99,843 + GFF2052 0.22 -0.3 99,843 + GFF2052 0.22 +0.1 99,843 + GFF2052 0.22 +0.7 99,843 + GFF2052 0.22 -0.4 99,843 + GFF2052 0.22 +1.7 99,843 + GFF2052 0.22 +1.3 99,843 + GFF2052 0.22 -0.4 99,844 - GFF2052 0.22 +0.6 99,844 - GFF2052 0.22 -0.4 99,844 - GFF2052 0.22 +2.2 99,882 + GFF2052 0.24 +0.0 99,883 - GFF2052 0.24 -0.8 99,883 - GFF2052 0.24 -0.1 99,883 - GFF2052 0.24 -0.3 99,883 - GFF2052 0.24 -0.4 99,906 + GFF2052 0.25 -1.4 99,906 + GFF2052 0.25 +0.7 99,906 + GFF2052 0.25 -0.2 99,906 + GFF2052 0.25 -0.0 99,906 + GFF2052 0.25 -0.5 99,906 + GFF2052 0.25 +0.2 99,906 + GFF2052 0.25 +0.2 99,907 - GFF2052 0.25 +1.0 99,907 - GFF2052 0.25 -0.8 99,907 - GFF2052 0.25 +0.9 99,907 - GFF2052 0.25 -0.5 99,907 - GFF2052 0.25 -0.4 99,907 - GFF2052 0.25 -0.8 99,993 + GFF2052 0.29 -0.1 99,993 + GFF2052 0.29 +0.5 99,993 + GFF2052 0.29 -0.6 99,994 - GFF2052 0.29 -0.0 99,994 - GFF2052 0.29 -1.1 99,994 - GFF2052 0.29 -0.2 100,059 + GFF2052 0.32 -0.7 100,059 + GFF2052 0.32 +0.4 100,059 + GFF2052 0.32 -0.3 100,060 - GFF2052 0.32 -1.3 100,060 - GFF2052 0.32 -0.9 100,060 - GFF2052 0.32 -0.3 100,060 - GFF2052 0.32 -1.3 100,248 + GFF2052 0.41 -0.2 100,249 - GFF2052 0.41 +0.7 100,302 + GFF2052 0.44 -0.5 100,302 + GFF2052 0.44 -0.1 100,302 + GFF2052 0.44 -0.7 100,303 - GFF2052 0.44 -0.3 100,303 - GFF2052 0.44 +0.3 100,311 + GFF2052 0.44 -0.5 100,311 + GFF2052 0.44 +0.3 100,311 + GFF2052 0.44 -1.7 100,311 + GFF2052 0.44 -0.7 100,312 - GFF2052 0.44 +0.4 100,312 - GFF2052 0.44 -0.6 100,312 - GFF2052 0.44 -0.8 100,312 - GFF2052 0.44 +0.1 100,368 + GFF2052 0.47 -0.4 100,368 + GFF2052 0.47 -1.6 100,369 - GFF2052 0.47 -0.3 100,369 - GFF2052 0.47 +1.7 100,369 - GFF2052 0.47 -0.7 100,369 - GFF2052 0.47 -0.8 100,369 - GFF2052 0.47 +1.0 100,434 + GFF2052 0.50 -0.3 100,434 + GFF2052 0.50 +0.9 100,434 + GFF2052 0.50 -0.1 100,434 + GFF2052 0.50 -0.5 100,434 + GFF2052 0.50 +0.5 100,434 + GFF2052 0.50 +0.1 100,435 - GFF2052 0.50 -0.3 100,435 - GFF2052 0.50 -0.4 100,435 - GFF2052 0.50 -0.4 100,435 - GFF2052 0.50 +0.1 100,435 - GFF2052 0.50 -1.1 100,435 - GFF2052 0.50 -1.3 100,435 - GFF2052 0.50 -0.4 100,521 + GFF2052 0.54 -0.3 100,521 + GFF2052 0.54 -0.2 100,521 + GFF2052 0.54 -0.3 100,521 + GFF2052 0.54 -0.3 100,521 + GFF2052 0.54 -0.2 100,522 - GFF2052 0.54 -0.3 100,522 - GFF2052 0.54 +0.3 100,522 - GFF2052 0.54 -0.0 100,522 - GFF2052 0.54 -1.0 100,522 - GFF2052 0.54 -1.0 100,522 - GFF2052 0.54 -0.4 100,522 - GFF2052 0.54 -0.8 100,547 - GFF2052 0.55 -1.4 100,699 - GFF2052 0.62 -0.7 100,803 + GFF2052 0.67 -1.0 100,804 - GFF2052 0.67 -0.5 100,842 + GFF2052 0.69 -0.6 100,842 + GFF2052 0.69 -0.2 100,843 - GFF2052 0.69 -0.3 100,843 - GFF2052 0.69 +1.3 100,843 - GFF2052 0.69 +0.1 100,843 - GFF2052 0.69 -0.6 100,843 - GFF2052 0.69 -0.3 100,843 - GFF2052 0.69 -0.6 100,956 + GFF2052 0.75 -0.8 100,956 + GFF2052 0.75 -0.3 100,956 + GFF2052 0.75 +0.1 100,956 + GFF2052 0.75 -1.1 100,957 - GFF2052 0.75 -0.9 100,957 - GFF2052 0.75 -1.2 100,957 - GFF2052 0.75 -0.3 100,957 - GFF2052 0.75 -0.2 100,957 - GFF2052 0.75 +1.2 100,957 - GFF2052 0.75 +1.2 100,957 - GFF2052 0.75 -0.5 100,957 - GFF2052 0.75 +1.3 101,040 + GFF2052 0.79 +0.0 101,040 + GFF2052 0.79 -0.8 101,137 + GFF2052 0.83 -0.2 101,139 + GFF2052 0.83 +0.2 101,139 + GFF2052 0.83 -0.4 101,139 + GFF2052 0.83 -0.5 101,139 + GFF2052 0.83 -0.7 101,139 + GFF2052 0.83 -0.6 101,139 + GFF2052 0.83 +0.5 101,139 + GFF2052 0.83 -0.6 101,139 + GFF2052 0.83 -0.0 101,139 + GFF2052 0.83 -0.2 101,139 + GFF2052 0.83 +0.6 101,139 + GFF2052 0.83 -1.1 101,140 - GFF2052 0.83 -0.8 101,140 - GFF2052 0.83 -1.4 101,140 - GFF2052 0.83 -1.1 101,140 - GFF2052 0.83 +0.6 101,140 - GFF2052 0.83 -1.7 101,140 - GFF2052 0.83 -0.5 101,140 - GFF2052 0.83 -0.4 101,140 - GFF2052 0.83 +0.4 101,140 - GFF2052 0.83 -1.2 101,140 - GFF2052 0.83 +0.6 101,140 - GFF2052 0.83 -1.4 101,140 - GFF2052 0.83 -1.7 101,140 - GFF2052 0.83 -0.8 101,140 - GFF2052 0.83 -0.3 101,140 - GFF2052 0.83 -1.1 101,140 - GFF2052 0.83 -0.8 101,140 - GFF2052 0.83 -0.4 101,140 - GFF2052 0.83 -0.6 101,211 + GFF2052 0.87 -0.0 101,265 + GFF2052 0.89 -0.8 101,265 + GFF2052 0.89 +0.2 101,265 + GFF2052 0.89 +0.0 101,265 + GFF2052 0.89 -0.9 101,266 - GFF2052 0.89 -0.3 101,266 - GFF2052 0.89 +0.2 101,274 + GFF2052 0.90 -1.3 101,274 + GFF2052 0.90 -0.3 101,274 + GFF2052 0.90 -0.1 101,274 + GFF2052 0.90 -0.6 101,274 + GFF2052 0.90 +1.7 101,274 + GFF2052 0.90 -1.4 101,274 + GFF2052 0.90 +0.4 101,275 - GFF2052 0.90 -0.6 101,275 - GFF2052 0.90 +0.5 101,478 + +0.2 101,478 + -1.0 101,478 + +0.5 101,478 + -0.7 101,479 - -1.4 101,479 - +0.0 101,479 - +0.2 101,479 - -0.2 101,479 - -1.1 101,571 - +0.2 101,668 + -0.0 101,668 + -0.3 101,668 + -0.5 101,668 + -0.8 101,668 + +0.3 101,669 - -0.3
Or see this region's nucleotide sequence