Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2045 and GFF2046 are separated by 90 nucleotides GFF2046 and GFF2047 overlap by 4 nucleotides GFF2047 and GFF2048 overlap by 4 nucleotides GFF2048 and GFF2049 are separated by 32 nucleotides
GFF2045 - Peptide chain release factor 3, at 93,149 to 94,777
GFF2045
GFF2046 - no description, at 94,868 to 95,476
GFF2046
GFF2047 - Polyhydroxyalkanoic acid synthase, at 95,473 to 96,546
GFF2047
GFF2048 - hypothetical protein, at 96,543 to 96,950
GFF2048
GFF2049 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 96,983 to 97,903
GFF2049
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.896 kb on + strand at 94.897 kb on - strand at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.967 kb on - strand, within GFF2046 at 95.246 kb on + strand, within GFF2046 at 95.247 kb on - strand, within GFF2046 at 95.464 kb on - strand at 95.627 kb on + strand, within GFF2047 at 95.628 kb on - strand, within GFF2047 at 95.628 kb on - strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.972 kb on + strand, within GFF2047 at 96.078 kb on - strand, within GFF2047 at 96.185 kb on + strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.243 kb on - strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.252 kb on - strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.270 kb on - strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.377 kb on + strand, within GFF2047 at 96.378 kb on - strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 97.362 kb on + strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 94,488 + GFF2045 0.82 +0.7 94,488 + GFF2045 0.82 -0.1 94,488 + GFF2045 0.82 -1.1 94,488 + GFF2045 0.82 +0.3 94,552 - GFF2045 0.86 +0.8 94,552 - GFF2045 0.86 +0.8 94,552 - GFF2045 0.86 -2.3 94,896 + +0.0 94,897 - +2.7 94,966 + GFF2046 0.16 -0.2 94,966 + GFF2046 0.16 -0.2 94,966 + GFF2046 0.16 -0.7 94,966 + GFF2046 0.16 -0.1 94,967 - GFF2046 0.16 +0.6 95,246 + GFF2046 0.62 -0.3 95,247 - GFF2046 0.62 -0.6 95,464 - +2.5 95,627 + GFF2047 0.14 -0.7 95,628 - GFF2047 0.14 +0.2 95,628 - GFF2047 0.14 -0.4 95,771 + GFF2047 0.28 -1.3 95,771 + GFF2047 0.28 +1.6 95,771 + GFF2047 0.28 -0.0 95,772 - GFF2047 0.28 -0.5 95,772 - GFF2047 0.28 -0.3 95,772 - GFF2047 0.28 -1.1 95,972 + GFF2047 0.46 -1.2 96,078 - GFF2047 0.56 -0.0 96,185 + GFF2047 0.66 -0.4 96,186 - GFF2047 0.66 -0.4 96,186 - GFF2047 0.66 -0.5 96,186 - GFF2047 0.66 -0.9 96,242 + GFF2047 0.72 -0.5 96,242 + GFF2047 0.72 -0.8 96,242 + GFF2047 0.72 -0.5 96,242 + GFF2047 0.72 +1.3 96,242 + GFF2047 0.72 -2.0 96,242 + GFF2047 0.72 -1.0 96,243 - GFF2047 0.72 -1.0 96,251 + GFF2047 0.72 -0.3 96,251 + GFF2047 0.72 +0.3 96,252 - GFF2047 0.73 -0.5 96,269 + GFF2047 0.74 -2.4 96,269 + GFF2047 0.74 +0.4 96,269 + GFF2047 0.74 +0.6 96,270 - GFF2047 0.74 +1.7 96,308 + GFF2047 0.78 -1.1 96,308 + GFF2047 0.78 +1.3 96,308 + GFF2047 0.78 -0.6 96,309 - GFF2047 0.78 -0.0 96,309 - GFF2047 0.78 -0.3 96,354 - GFF2047 0.82 +0.3 96,354 - GFF2047 0.82 -0.3 96,377 + GFF2047 0.84 +0.0 96,378 - GFF2047 0.84 -0.4 96,383 + GFF2047 0.85 +1.7 96,383 + GFF2047 0.85 -0.4 96,384 - GFF2047 0.85 -0.6 96,384 - GFF2047 0.85 +1.2 96,384 - GFF2047 0.85 -1.1 96,384 - GFF2047 0.85 +1.0 97,362 + GFF2049 0.41 +0.5 97,363 - GFF2049 0.41 +1.4 97,363 - GFF2049 0.41 -0.1 97,363 - GFF2049 0.41 +0.4 97,363 - GFF2049 0.41 +0.0
Or see this region's nucleotide sequence