Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2030 and GFF2031 are separated by 183 nucleotides GFF2031 and GFF2032 are separated by 186 nucleotides
GFF2030 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 72,469 to 73,581
GFF2030
GFF2031 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 73,765 to 74,877
GFF2031
GFF2032 - Excinuclease ABC subunit A, dimeric form, at 75,064 to 80,907
GFF2032
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 72.971 kb on + strand, within GFF2030 at 72.972 kb on - strand, within GFF2030 at 72.972 kb on - strand, within GFF2030 at 73.151 kb on + strand, within GFF2030 at 73.152 kb on - strand, within GFF2030 at 73.152 kb on - strand, within GFF2030 at 73.169 kb on + strand, within GFF2030 at 73.238 kb on + strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.507 kb on + strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.628 kb on + strand at 73.628 kb on + strand at 73.629 kb on - strand at 73.629 kb on - strand at 73.838 kb on + strand at 73.839 kb on - strand at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.271 kb on - strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.450 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.935 kb on + strand at 74.935 kb on + strand at 74.936 kb on - strand at 75.004 kb on - strand at 75.004 kb on - strand at 75.004 kb on - strand at 75.034 kb on - strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.226 kb on + strand at 75.227 kb on - strand at 75.247 kb on + strand at 75.247 kb on + strand at 75.475 kb on + strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 72,971 + GFF2030 0.45 -0.3 72,972 - GFF2030 0.45 +0.4 72,972 - GFF2030 0.45 -0.7 73,151 + GFF2030 0.61 +0.8 73,152 - GFF2030 0.61 -0.8 73,152 - GFF2030 0.61 -1.1 73,169 + GFF2030 0.63 +0.0 73,238 + GFF2030 0.69 +1.3 73,239 - GFF2030 0.69 -2.7 73,239 - GFF2030 0.69 +0.3 73,239 - GFF2030 0.69 +0.7 73,507 + -1.0 73,508 - -0.7 73,508 - -0.6 73,508 - +0.4 73,508 - -0.1 73,628 + +0.1 73,628 + -0.5 73,629 - -1.3 73,629 - -1.4 73,838 + -0.7 73,839 - -0.5 74,270 + GFF2031 0.45 -0.1 74,270 + GFF2031 0.45 -0.5 74,270 + GFF2031 0.45 -0.3 74,270 + GFF2031 0.45 -0.2 74,271 - GFF2031 0.45 -1.4 74,381 + GFF2031 0.55 -0.3 74,381 + GFF2031 0.55 -0.4 74,381 + GFF2031 0.55 -0.3 74,381 + GFF2031 0.55 -0.6 74,382 - GFF2031 0.55 -0.3 74,382 - GFF2031 0.55 -1.3 74,382 - GFF2031 0.55 -0.7 74,382 - GFF2031 0.55 -0.4 74,382 - GFF2031 0.55 +0.3 74,382 - GFF2031 0.55 -1.6 74,382 - GFF2031 0.55 -0.1 74,382 - GFF2031 0.55 +0.4 74,450 + GFF2031 0.62 -1.1 74,537 + GFF2031 0.69 +0.2 74,537 + GFF2031 0.69 -0.0 74,538 - GFF2031 0.69 -0.3 74,538 - GFF2031 0.69 -0.4 74,538 - GFF2031 0.69 -0.9 74,538 - GFF2031 0.69 +1.1 74,935 + -0.5 74,935 + +0.2 74,936 - -0.5 75,004 - +0.1 75,004 - -0.2 75,004 - -0.4 75,034 - -1.1 75,205 + -0.3 75,205 + -0.5 75,205 + -0.1 75,205 + -0.4 75,226 + -1.3 75,227 - +1.0 75,247 + +0.4 75,247 + +1.7 75,475 + +0.6 75,476 - +0.7 75,476 - -0.9 75,476 - -0.8
Or see this region's nucleotide sequence