Strain Fitness in Variovorax sp. SCN45 around GFF2028

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
69,590	-				-0.8
69,640	+		GFF2027	0.14	-0.6
69,640	+		GFF2027	0.14	-0.1
69,640	+		GFF2027	0.14	+0.5
69,640	+		GFF2027	0.14	-1.0
69,640	+		GFF2027	0.14	-0.7
69,640	+		GFF2027	0.14	-0.4
69,641	-		GFF2027	0.14	-0.3
69,641	-		GFF2027	0.14	+0.3
69,641	-		GFF2027	0.14	-0.6
69,641	-		GFF2027	0.14	-1.3
69,641	-		GFF2027	0.14	-0.4
69,652	+		GFF2027	0.16	-1.3
69,652	+		GFF2027	0.16	+0.9
69,653	-		GFF2027	0.16	-0.7
69,653	-		GFF2027	0.16	-0.3
69,653	-		GFF2027	0.16	-0.3
69,736	+		GFF2027	0.29	-0.9
69,736	+		GFF2027	0.29	-1.0
69,736	+		GFF2027	0.29	-0.5
69,737	-		GFF2027	0.29	-0.5
69,737	-		GFF2027	0.29	-0.8
69,737	-		GFF2027	0.29	-0.6
69,802	+		GFF2027	0.39	-0.1
69,802	+		GFF2027	0.39	+0.7
69,802	+		GFF2027	0.39	-0.8
69,802	+		GFF2027	0.39	-0.9
69,802	+		GFF2027	0.39	-0.4
69,803	-		GFF2027	0.39	-0.4
69,803	-		GFF2027	0.39	-0.5
69,803	-		GFF2027	0.39	-0.8
69,803	-		GFF2027	0.39	+0.2
70,051	+		GFF2027	0.77	-0.3
70,051	+		GFF2027	0.77	-0.3
70,051	+		GFF2027	0.77	-0.2
70,051	+		GFF2027	0.77	+0.6
70,051	+		GFF2027	0.77	-0.7
70,051	+		GFF2027	0.77	+1.4
70,051	+		GFF2027	0.77	+0.4
70,051	+		GFF2027	0.77	-1.1
70,051	+		GFF2027	0.77	-1.2
70,052	-		GFF2027	0.77	-0.3
70,052	-		GFF2027	0.77	-0.7
70,052	-		GFF2027	0.77	+0.2
70,052	-		GFF2027	0.77	+0.5
70,052	-		GFF2027	0.77	-0.1
70,052	-		GFF2027	0.77	-0.2
70,108	+		GFF2027	0.86	+0.3
70,108	+		GFF2027	0.86	-0.7
70,108	-		GFF2027	0.86	+0.1
70,109	-		GFF2027	0.86	+0.7
70,260	+				-0.7
70,261	-				-0.2
70,261	-				-0.6
70,267	+				-0.7
70,360	+				-0.3
70,360	+				+0.2
70,360	+				+1.7
70,360	+				-1.1
70,360	+				+0.9
70,360	+				-3.0
70,360	+				-0.3
70,360	+				+0.0
70,360	+				-0.3
70,360	+				+0.3
70,361	-				-0.6
70,361	-				-1.1
70,361	-				+0.2
70,361	-				-0.5
70,361	-				-0.1
70,361	-				-0.5
70,361	-				+0.6
70,392	+				-1.3
70,392	+				-0.3
70,392	+				+0.3
70,392	+				+0.6
70,393	-				-0.6
70,393	-				+0.9
70,393	-				+0.4
70,491	-				-0.2
70,499	+				-0.8
70,499	+				-1.1
70,499	+				-0.6
70,499	+				+0.2
70,500	-				-0.1
70,500	-				+0.4
70,500	-				-0.4
70,500	-				+1.0
70,500	-				-0.5
70,505	+				+0.2
70,664	+		GFF2028	0.17	-0.6
70,664	+		GFF2028	0.17	-0.5
70,664	+		GFF2028	0.17	-0.3
70,664	+		GFF2028	0.17	-0.0
70,664	+		GFF2028	0.17	+1.3
70,664	+		GFF2028	0.17	-1.7
70,664	+		GFF2028	0.17	-0.2
70,664	+		GFF2028	0.17	-1.5
70,665	-		GFF2028	0.17	+0.1
70,665	-		GFF2028	0.17	+0.4
70,665	-		GFF2028	0.17	+0.2
70,665	-		GFF2028	0.17	-1.4
70,665	-		GFF2028	0.17	-0.5
70,665	-		GFF2028	0.17	-0.6
70,665	-		GFF2028	0.17	-0.7
70,665	-		GFF2028	0.17	-2.2
70,808	+		GFF2028	0.25	-0.6
70,826	+		GFF2028	0.26	-1.3
70,826	+		GFF2028	0.26	-0.6
70,826	+		GFF2028	0.26	-0.5
70,826	+		GFF2028	0.26	-0.3
70,826	+		GFF2028	0.26	-1.7
70,826	+		GFF2028	0.26	+0.7
70,826	+		GFF2028	0.26	+1.3
70,826	+		GFF2028	0.26	-0.8
70,826	+		GFF2028	0.26	-0.3
70,826	+		GFF2028	0.26	-0.9
70,826	+		GFF2028	0.26	-0.3
70,826	+		GFF2028	0.26	-0.6
70,826	+		GFF2028	0.26	-0.5
70,826	+		GFF2028	0.26	-1.1
70,826	+		GFF2028	0.26	-0.9
70,827	-		GFF2028	0.26	-0.3
70,827	-		GFF2028	0.26	-0.2
70,827	-		GFF2028	0.26	-0.3
70,827	-		GFF2028	0.26	-0.2
70,827	-		GFF2028	0.26	-0.0
70,827	-		GFF2028	0.26	-0.3
70,827	-		GFF2028	0.26	-0.7
70,827	-		GFF2028	0.26	-0.6
70,865	+		GFF2028	0.29	-0.7
70,865	+		GFF2028	0.29	-0.9
70,865	+		GFF2028	0.29	+0.2
70,865	+		GFF2028	0.29	+1.3
70,865	+		GFF2028	0.29	-0.6
70,866	-		GFF2028	0.29	-0.7
70,866	-		GFF2028	0.29	-0.5
70,866	-		GFF2028	0.29	+1.0
71,183	+		GFF2028	0.47	-1.1
71,184	-		GFF2028	0.47	-0.1
71,184	-		GFF2028	0.47	-0.3
71,184	-		GFF2028	0.47	+0.3
71,198	+		GFF2028	0.48	+0.6
71,198	+		GFF2028	0.48	-0.3
71,198	+		GFF2028	0.48	-1.8
71,198	+		GFF2028	0.48	-0.2
71,199	-		GFF2028	0.48	-0.3
71,199	-		GFF2028	0.48	-0.3
71,199	-		GFF2028	0.48	-0.9
71,199	-		GFF2028	0.48	+0.3
71,199	-		GFF2028	0.48	+0.4
71,199	-		GFF2028	0.48	-0.3
71,199	-		GFF2028	0.48	-0.5
71,372	+		GFF2028	0.59	+0.3
71,372	+		GFF2028	0.59	-1.1
71,372	+		GFF2028	0.59	-0.3
71,373	-		GFF2028	0.59	-0.6
71,373	-		GFF2028	0.59	-0.2
71,373	-		GFF2028	0.59	-0.8
71,373	-		GFF2028	0.59	+1.7
71,373	-		GFF2028	0.59	+0.7
71,540	+		GFF2028	0.68	+0.2
71,540	+		GFF2028	0.68	+0.0
71,541	-		GFF2028	0.69	-0.6
71,564	+		GFF2028	0.70	+0.0
71,564	+		GFF2028	0.70	-0.6
71,565	-		GFF2028	0.70	+0.1
71,565	-		GFF2028	0.70	-0.7
71,805	+		GFF2028	0.84	+0.3
71,805	+		GFF2028	0.84	-0.8
71,805	+		GFF2028	0.84	+0.2
71,819	+		GFF2028	0.85	+1.2
71,819	+		GFF2028	0.85	-1.1
71,821	-		GFF2028	0.85	+0.1
71,870	+		GFF2028	0.88	-0.6
71,870	+		GFF2028	0.88	-0.5
71,870	+		GFF2028	0.88	+0.1
71,871	-		GFF2028	0.88	-0.7
71,871	-		GFF2028	0.88	-0.4
71,871	-		GFF2028	0.88	-0.7
71,969	+				-0.1
71,969	+				-1.0
71,969	+				+0.2
71,969	+				-0.3
71,969	+				-0.4
71,969	+				-0.6
71,969	+				-0.7
71,969	+				+0.6
71,969	+				-0.5
71,969	+				-0.6
71,969	+				-0.3
71,970	-				+1.4
71,970	-				+0.2
71,970	-				-0.4
71,970	-				+0.0
71,970	-				-1.1
71,970	-				-0.6
71,970	-				-0.1
71,970	-				-0.4
71,970	-				+0.2
71,970	-				-0.4
71,970	-				+0.0
71,970	-				+0.6
71,970	-				-1.2
72,059	+				-1.1
72,059	+				-0.6
72,059	+				-0.4
72,059	+				+0.2
72,059	+				+0.1
72,059	+				+0.2
72,060	-				-0.5
72,352	+				-1.6
72,352	+				+2.3
72,353	-				-1.6
72,353	-				-0.1
72,353	-				-0.7
72,512	+				-0.6
72,512	+				-0.0
72,513	-				-0.3
72,513	-				-0.2
72,513	-				-0.5
72,542	+				+0.8
72,542	+				+0.3
72,542	+				-1.7
72,543	-				+0.5
72,572	+				-1.1
72,572	+				-0.1
72,572	+				-0.4
72,573	-				-1.0
72,573	-				+0.5
72,971	+		GFF2030	0.45	-0.3
72,972	-		GFF2030	0.45	+0.4
72,972	-		GFF2030	0.45	-0.7