Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2018 and GFF2019 overlap by 4 nucleotides GFF2019 and GFF2020 are separated by 33 nucleotides GFF2020 and GFF2021 are separated by 127 nucleotides
GFF2018 - Transcriptional regulator, IclR family, at 62,378 to 63,127
GFF2018
GFF2019 - FIG00976956: hypothetical protein, at 63,124 to 63,519
GFF2019
GFF2020 - BUG/TctC family periplasmic protein, at 63,553 to 64,575
GFF2020
GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926
GFF2021
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.558 kb on + strand, within GFF2018 at 62.558 kb on + strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.559 kb on - strand, within GFF2018 at 62.562 kb on - strand, within GFF2018 at 62.562 kb on - strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.711 kb on + strand, within GFF2018 at 62.712 kb on - strand, within GFF2018 at 62.747 kb on + strand, within GFF2018 at 62.747 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.011 kb on + strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.012 kb on - strand, within GFF2018 at 63.113 kb on + strand at 63.151 kb on + strand at 63.152 kb on - strand at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.331 kb on + strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.332 kb on - strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.472 kb on + strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.473 kb on - strand, within GFF2019 at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.533 kb on + strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.534 kb on - strand at 63.698 kb on + strand, within GFF2020 at 63.698 kb on + strand, within GFF2020 at 63.865 kb on + strand, within GFF2020 at 63.865 kb on + strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.866 kb on - strand, within GFF2020 at 63.931 kb on + strand, within GFF2020 at 63.932 kb on - strand, within GFF2020 at 63.932 kb on - strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.069 kb on + strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.070 kb on - strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.150 kb on + strand, within GFF2020 at 64.151 kb on - strand, within GFF2020 at 64.151 kb on - strand, within GFF2020 at 64.633 kb on + strand at 64.701 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.708 kb on + strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.709 kb on - strand at 64.769 kb on + strand at 64.871 kb on - strand, within GFF2021 at 64.988 kb on + strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 65.031 kb on - strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.067 kb on - strand, within GFF2021 at 65.085 kb on - strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.420 kb on + strand, within GFF2021 at 65.421 kb on - strand, within GFF2021 at 65.456 kb on + strand, within GFF2021 at 65.457 kb on - strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 62,558 + GFF2018 0.24 -0.7 62,558 + GFF2018 0.24 -0.8 62,559 - GFF2018 0.24 -0.6 62,559 - GFF2018 0.24 -0.4 62,559 - GFF2018 0.24 -0.6 62,562 - GFF2018 0.25 -0.7 62,562 - GFF2018 0.25 -0.8 62,711 + GFF2018 0.44 -0.0 62,711 + GFF2018 0.44 -0.5 62,711 + GFF2018 0.44 -1.4 62,711 + GFF2018 0.44 +0.4 62,711 + GFF2018 0.44 +0.5 62,711 + GFF2018 0.44 -0.3 62,712 - GFF2018 0.45 +2.0 62,747 + GFF2018 0.49 -0.8 62,747 + GFF2018 0.49 -0.5 63,011 + GFF2018 0.84 -0.3 63,011 + GFF2018 0.84 -1.1 63,011 + GFF2018 0.84 -1.8 63,011 + GFF2018 0.84 -1.8 63,012 - GFF2018 0.85 -0.7 63,012 - GFF2018 0.85 -0.0 63,012 - GFF2018 0.85 +0.3 63,012 - GFF2018 0.85 -0.4 63,113 + +0.7 63,151 + -0.3 63,152 - +0.4 63,331 + GFF2019 0.52 -0.2 63,331 + GFF2019 0.52 -0.1 63,331 + GFF2019 0.52 +0.3 63,331 + GFF2019 0.52 -0.6 63,331 + GFF2019 0.52 +1.2 63,331 + GFF2019 0.52 -0.3 63,331 + GFF2019 0.52 +0.0 63,332 - GFF2019 0.53 -1.0 63,332 - GFF2019 0.53 -1.1 63,332 - GFF2019 0.53 +1.4 63,332 - GFF2019 0.53 -0.2 63,332 - GFF2019 0.53 -0.2 63,332 - GFF2019 0.53 -0.5 63,332 - GFF2019 0.53 +0.9 63,472 + GFF2019 0.88 -0.1 63,472 + GFF2019 0.88 -0.3 63,472 + GFF2019 0.88 -0.8 63,472 + GFF2019 0.88 +0.2 63,473 - GFF2019 0.88 -0.8 63,473 - GFF2019 0.88 +0.4 63,473 - GFF2019 0.88 -0.7 63,533 + -0.4 63,533 + -1.0 63,533 + -1.1 63,533 + -0.6 63,533 + +0.2 63,533 + -1.0 63,533 + -0.6 63,533 + -0.4 63,533 + +1.4 63,534 - -0.7 63,534 - -1.1 63,534 - +0.2 63,534 - -0.3 63,534 - -0.6 63,534 - -0.3 63,534 - -0.3 63,534 - -0.1 63,534 - +0.2 63,534 - +0.2 63,534 - +0.1 63,534 - -0.9 63,534 - +0.2 63,534 - -0.4 63,698 + GFF2020 0.14 +0.7 63,698 + GFF2020 0.14 +0.3 63,865 + GFF2020 0.30 -0.2 63,865 + GFF2020 0.30 -0.8 63,866 - GFF2020 0.31 +0.2 63,866 - GFF2020 0.31 +0.1 63,866 - GFF2020 0.31 +0.7 63,866 - GFF2020 0.31 -0.8 63,931 + GFF2020 0.37 -0.4 63,932 - GFF2020 0.37 -0.6 63,932 - GFF2020 0.37 -0.3 64,069 + GFF2020 0.50 -0.1 64,069 + GFF2020 0.50 -1.0 64,069 + GFF2020 0.50 -0.3 64,069 + GFF2020 0.50 -0.5 64,070 - GFF2020 0.51 -0.7 64,070 - GFF2020 0.51 +0.0 64,070 - GFF2020 0.51 -0.4 64,070 - GFF2020 0.51 -0.5 64,070 - GFF2020 0.51 -0.9 64,150 + GFF2020 0.58 -1.6 64,150 + GFF2020 0.58 -0.4 64,150 + GFF2020 0.58 -1.2 64,150 + GFF2020 0.58 -1.2 64,150 + GFF2020 0.58 -0.4 64,151 - GFF2020 0.58 -0.0 64,151 - GFF2020 0.58 -0.8 64,633 + +0.0 64,701 + +0.4 64,708 + -0.5 64,708 + -1.0 64,708 + +0.5 64,708 + +0.3 64,708 + +0.6 64,708 + -0.2 64,709 - +1.3 64,709 - -0.6 64,709 - +0.3 64,709 - -0.3 64,709 - -0.3 64,709 - +0.2 64,709 - +1.0 64,709 - +0.2 64,709 - -1.0 64,709 - -0.6 64,709 - -0.2 64,709 - -0.3 64,769 + +0.1 64,871 - GFF2021 0.14 +0.5 64,988 + GFF2021 0.23 +0.0 64,989 - GFF2021 0.23 -2.2 64,989 - GFF2021 0.23 -0.0 65,031 - GFF2021 0.27 -0.6 65,066 + GFF2021 0.30 -0.7 65,066 + GFF2021 0.30 +0.4 65,067 - GFF2021 0.30 -0.2 65,085 - GFF2021 0.31 -1.0 65,102 + GFF2021 0.33 -0.3 65,102 + GFF2021 0.33 -0.2 65,420 + GFF2021 0.59 -0.3 65,421 - GFF2021 0.59 +0.0 65,456 + GFF2021 0.62 -0.4 65,457 - GFF2021 0.62 +0.3 65,567 + GFF2021 0.71 +0.6 65,567 + GFF2021 0.71 -0.1 65,567 + GFF2021 0.71 -0.4 65,567 + GFF2021 0.71 -1.3 65,568 - GFF2021 0.71 -0.2 65,568 - GFF2021 0.71 -0.3 65,568 - GFF2021 0.71 -0.8 65,568 - GFF2021 0.71 -0.8
Or see this region's nucleotide sequence