Strain Fitness in Variovorax sp. SCN45 around GFF1996

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1995 and GFF1996 are separated by 117 nucleotidesGFF1996 and GFF1997 are separated by 19 nucleotidesGFF1997 and GFF1998 are separated by 147 nucleotides GFF1995 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 37,721 to 38,851 GFF1995 GFF1996 - Indoleacetamide hydrolase (EC 3.5.1.-), at 38,969 to 40,489 GFF1996 GFF1997 - no description, at 40,509 to 41,273 GFF1997 GFF1998 - Two-component system sensor histidine kinase, at 41,421 to 43,208 GFF1998 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.016 kb on - strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.156 kb on + strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.157 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.292 kb on - strand, within GFF1995at 38.409 kb on - strand, within GFF1995at 38.409 kb on - strand, within GFF1995at 38.504 kb on + strand, within GFF1995at 38.505 kb on - strand, within GFF1995at 38.505 kb on - strand, within GFF1995at 38.735 kb on + strand, within GFF1995at 38.741 kb on + strandat 38.741 kb on + strandat 38.741 kb on + strandat 38.771 kb on + strandat 38.798 kb on + strandat 38.798 kb on + strandat 38.798 kb on + strandat 38.799 kb on - strandat 38.799 kb on - strandat 38.799 kb on - strandat 39.150 kb on - strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.306 kb on + strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.307 kb on - strand, within GFF1996at 39.461 kb on + strand, within GFF1996at 39.462 kb on - strand, within GFF1996at 39.509 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.833 kb on + strand, within GFF1996at 39.834 kb on - strand, within GFF1996at 39.834 kb on - strand, within GFF1996at 39.834 kb on - strand, within GFF1996at 39.974 kb on + strand, within GFF1996at 40.001 kb on + strand, within GFF1996at 40.001 kb on + strand, within GFF1996at 40.001 kb on + strand, within GFF1996at 40.014 kb on - strand, within GFF1996at 40.145 kb on + strand, within GFF1996at 40.146 kb on - strand, within GFF1996at 40.146 kb on - strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.188 kb on + strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.189 kb on - strand, within GFF1996at 40.487 kb on + strandat 40.487 kb on + strandat 40.591 kb on + strand, within GFF1997at 40.591 kb on + strand, within GFF1997at 40.591 kb on + strand, within GFF1997at 40.592 kb on - strand, within GFF1997at 40.592 kb on - strand, within GFF1997at 40.592 kb on - strand, within GFF1997at 40.592 kb on - strand, within GFF1997at 40.592 kb on - strand, within GFF1997at 41.269 kb on + strandat 41.270 kb on - strandat 41.270 kb on - strandat 41.270 kb on - strandat 41.300 kb on + strandat 41.313 kb on + strandat 41.314 kb on - strandat 41.487 kb on + strandat 41.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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38,016 - GFF1995 0.26 +0.0
38,156 + GFF1995 0.38 -0.7
38,156 + GFF1995 0.38 +0.2
38,156 + GFF1995 0.38 +0.2
38,157 - GFF1995 0.39 -0.4
38,157 - GFF1995 0.39 +0.3
38,157 - GFF1995 0.39 +0.3
38,292 - GFF1995 0.50 +0.3
38,292 - GFF1995 0.50 -0.3
38,292 - GFF1995 0.50 -0.0
38,409 - GFF1995 0.61 +0.9
38,409 - GFF1995 0.61 +0.2
38,504 + GFF1995 0.69 -1.3
38,505 - GFF1995 0.69 -0.9
38,505 - GFF1995 0.69 -1.8
38,735 + GFF1995 0.90 +0.4
38,741 + +1.7
38,741 + -0.8
38,741 + -0.3
38,771 + +0.2
38,798 + -0.3
38,798 + -0.3
38,798 + -0.7
38,799 - -0.7
38,799 - -0.7
38,799 - +0.3
39,150 - GFF1996 0.12 -0.3
39,306 + GFF1996 0.22 -0.4
39,306 + GFF1996 0.22 +0.8
39,306 + GFF1996 0.22 +0.4
39,306 + GFF1996 0.22 -0.8
39,306 + GFF1996 0.22 -1.6
39,306 + GFF1996 0.22 +0.2
39,306 + GFF1996 0.22 +0.7
39,306 + GFF1996 0.22 +1.7
39,306 + GFF1996 0.22 +1.5
39,306 + GFF1996 0.22 +0.2
39,306 + GFF1996 0.22 +0.6
39,306 + GFF1996 0.22 -0.4
39,306 + GFF1996 0.22 +0.2
39,306 + GFF1996 0.22 -0.4
39,306 + GFF1996 0.22 -0.3
39,306 + GFF1996 0.22 -1.6
39,307 - GFF1996 0.22 +0.2
39,307 - GFF1996 0.22 -0.4
39,307 - GFF1996 0.22 -2.2
39,307 - GFF1996 0.22 +0.3
39,307 - GFF1996 0.22 -0.1
39,307 - GFF1996 0.22 -0.3
39,307 - GFF1996 0.22 -0.6
39,307 - GFF1996 0.22 -0.6
39,307 - GFF1996 0.22 -0.5
39,307 - GFF1996 0.22 -1.2
39,307 - GFF1996 0.22 -1.1
39,307 - GFF1996 0.22 -0.6
39,307 - GFF1996 0.22 -0.2
39,307 - GFF1996 0.22 -0.4
39,307 - GFF1996 0.22 -0.9
39,307 - GFF1996 0.22 -0.5
39,307 - GFF1996 0.22 -1.4
39,461 + GFF1996 0.32 -1.4
39,462 - GFF1996 0.32 +0.2
39,509 + GFF1996 0.36 +0.4
39,833 + GFF1996 0.57 -1.6
39,833 + GFF1996 0.57 +0.2
39,833 + GFF1996 0.57 +0.6
39,834 - GFF1996 0.57 +0.0
39,834 - GFF1996 0.57 -1.1
39,834 - GFF1996 0.57 +0.1
39,974 + GFF1996 0.66 -0.7
40,001 + GFF1996 0.68 +0.9
40,001 + GFF1996 0.68 -1.0
40,001 + GFF1996 0.68 -0.1
40,014 - GFF1996 0.69 +0.7
40,145 + GFF1996 0.77 -0.2
40,146 - GFF1996 0.77 -0.3
40,146 - GFF1996 0.77 -1.3
40,188 + GFF1996 0.80 +0.2
40,188 + GFF1996 0.80 -1.0
40,188 + GFF1996 0.80 -0.6
40,188 + GFF1996 0.80 -0.9
40,188 + GFF1996 0.80 +0.5
40,188 + GFF1996 0.80 +0.6
40,189 - GFF1996 0.80 -0.6
40,189 - GFF1996 0.80 -0.1
40,189 - GFF1996 0.80 +0.9
40,189 - GFF1996 0.80 -0.8
40,189 - GFF1996 0.80 -0.2
40,189 - GFF1996 0.80 -1.8
40,189 - GFF1996 0.80 -0.2
40,189 - GFF1996 0.80 +0.1
40,487 + -0.8
40,487 + +0.0
40,591 + GFF1997 0.11 -0.4
40,591 + GFF1997 0.11 +0.2
40,591 + GFF1997 0.11 -0.6
40,592 - GFF1997 0.11 -0.7
40,592 - GFF1997 0.11 +0.2
40,592 - GFF1997 0.11 -0.7
40,592 - GFF1997 0.11 -0.8
40,592 - GFF1997 0.11 -0.2
41,269 + +0.4
41,270 - -1.1
41,270 - +0.7
41,270 - +1.1
41,300 + +0.1
41,313 + -0.5
41,314 - -0.6
41,487 + -0.4
41,487 + -1.5

Or see this region's nucleotide sequence