Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1973 and GFF1974 are separated by 169 nucleotides GFF1974 and GFF1975 are separated by 23 nucleotides GFF1975 and GFF1976 are separated by 153 nucleotides GFF1976 and GFF1977 are separated by 49 nucleotides
GFF1973 - NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 16,107 to 16,694
GFF1973
GFF1974 - hypothetical protein, at 16,864 to 17,187
GFF1974
GFF1975 - hypothetical protein, at 17,211 to 18,329
GFF1975
GFF1976 - Transcriptional regulator, AcrR family, at 18,483 to 19,274
GFF1976
GFF1977 - L-asparaginase (EC 3.5.1.1), at 19,324 to 20,394
GFF1977
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.237 kb on + strand, within GFF1973 at 16.237 kb on + strand, within GFF1973 at 16.237 kb on + strand, within GFF1973 at 16.238 kb on - strand, within GFF1973 at 16.238 kb on - strand, within GFF1973 at 16.238 kb on - strand, within GFF1973 at 16.238 kb on - strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.273 kb on + strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.274 kb on - strand, within GFF1973 at 16.300 kb on + strand, within GFF1973 at 16.300 kb on + strand, within GFF1973 at 16.301 kb on - strand, within GFF1973 at 16.406 kb on - strand, within GFF1973 at 16.489 kb on + strand, within GFF1973 at 16.489 kb on + strand, within GFF1973 at 16.528 kb on + strand, within GFF1973 at 16.576 kb on + strand, within GFF1973 at 16.576 kb on + strand, within GFF1973 at 16.676 kb on - strand at 16.711 kb on + strand at 16.711 kb on + strand at 16.712 kb on - strand at 16.734 kb on - strand at 16.734 kb on - strand at 16.864 kb on - strand at 16.864 kb on - strand at 16.864 kb on - strand at 16.864 kb on - strand at 17.053 kb on + strand, within GFF1974 at 17.053 kb on + strand, within GFF1974 at 17.053 kb on + strand, within GFF1974 at 17.053 kb on + strand, within GFF1974 at 17.059 kb on + strand, within GFF1974 at 17.108 kb on - strand, within GFF1974 at 17.185 kb on + strand at 17.185 kb on + strand at 17.185 kb on + strand at 17.186 kb on - strand at 17.186 kb on - strand at 17.186 kb on - strand at 17.311 kb on + strand at 17.311 kb on + strand at 17.312 kb on - strand at 17.312 kb on - strand at 17.401 kb on + strand, within GFF1975 at 17.401 kb on + strand, within GFF1975 at 17.437 kb on + strand, within GFF1975 at 17.438 kb on - strand, within GFF1975 at 17.438 kb on - strand, within GFF1975 at 17.438 kb on - strand, within GFF1975 at 17.443 kb on + strand, within GFF1975 at 17.582 kb on - strand, within GFF1975 at 17.620 kb on + strand, within GFF1975 at 17.620 kb on + strand, within GFF1975 at 17.620 kb on + strand, within GFF1975 at 17.620 kb on + strand, within GFF1975 at 17.620 kb on + strand, within GFF1975 at 17.621 kb on - strand, within GFF1975 at 17.621 kb on - strand, within GFF1975 at 17.621 kb on - strand, within GFF1975 at 17.621 kb on - strand, within GFF1975 at 17.698 kb on + strand, within GFF1975 at 17.698 kb on + strand, within GFF1975 at 17.698 kb on + strand, within GFF1975 at 17.698 kb on + strand, within GFF1975 at 17.699 kb on - strand, within GFF1975 at 17.699 kb on - strand, within GFF1975 at 17.740 kb on + strand, within GFF1975 at 17.740 kb on + strand, within GFF1975 at 17.740 kb on + strand, within GFF1975 at 17.740 kb on + strand, within GFF1975 at 17.740 kb on + strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.741 kb on - strand, within GFF1975 at 17.908 kb on + strand, within GFF1975 at 17.908 kb on + strand, within GFF1975 at 17.909 kb on - strand, within GFF1975 at 17.923 kb on + strand, within GFF1975 at 17.923 kb on + strand, within GFF1975 at 17.924 kb on - strand, within GFF1975 at 17.924 kb on - strand, within GFF1975 at 17.924 kb on - strand, within GFF1975 at 17.924 kb on - strand, within GFF1975 at 17.929 kb on + strand, within GFF1975 at 17.929 kb on + strand, within GFF1975 at 17.930 kb on - strand, within GFF1975 at 17.930 kb on - strand, within GFF1975 at 17.935 kb on + strand, within GFF1975 at 17.935 kb on + strand, within GFF1975 at 17.935 kb on + strand, within GFF1975 at 17.935 kb on + strand, within GFF1975 at 17.936 kb on - strand, within GFF1975 at 17.936 kb on - strand, within GFF1975 at 18.013 kb on + strand, within GFF1975 at 18.013 kb on + strand, within GFF1975 at 18.013 kb on + strand, within GFF1975 at 18.055 kb on + strand, within GFF1975 at 18.055 kb on + strand, within GFF1975 at 18.055 kb on + strand, within GFF1975 at 18.055 kb on + strand, within GFF1975 at 18.056 kb on - strand, within GFF1975 at 18.056 kb on - strand, within GFF1975 at 18.118 kb on + strand, within GFF1975 at 18.119 kb on - strand, within GFF1975 at 18.119 kb on - strand, within GFF1975 at 18.119 kb on - strand, within GFF1975 at 18.119 kb on - strand, within GFF1975 at 18.119 kb on - strand, within GFF1975 at 18.124 kb on + strand, within GFF1975 at 18.124 kb on + strand, within GFF1975 at 18.124 kb on + strand, within GFF1975 at 18.124 kb on + strand, within GFF1975 at 18.125 kb on - strand, within GFF1975 at 18.125 kb on - strand, within GFF1975 at 18.125 kb on - strand, within GFF1975 at 18.125 kb on - strand, within GFF1975 at 18.396 kb on + strand at 18.397 kb on - strand at 18.397 kb on - strand at 18.397 kb on - strand at 18.427 kb on + strand at 18.427 kb on + strand at 18.428 kb on - strand at 18.428 kb on - strand at 18.428 kb on - strand at 18.428 kb on - strand at 18.428 kb on - strand at 18.471 kb on + strand at 18.471 kb on + strand at 18.472 kb on - strand at 18.485 kb on - strand at 18.485 kb on - strand at 18.598 kb on + strand, within GFF1976 at 18.598 kb on + strand, within GFF1976 at 18.599 kb on - strand, within GFF1976 at 18.599 kb on - strand, within GFF1976 at 18.599 kb on - strand, within GFF1976 at 18.607 kb on + strand, within GFF1976 at 18.607 kb on + strand, within GFF1976 at 18.607 kb on + strand, within GFF1976 at 18.607 kb on + strand, within GFF1976 at 18.607 kb on + strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.608 kb on - strand, within GFF1976 at 18.737 kb on - strand, within GFF1976 at 18.832 kb on + strand, within GFF1976 at 18.832 kb on + strand, within GFF1976 at 18.832 kb on + strand, within GFF1976 at 18.833 kb on - strand, within GFF1976 at 18.833 kb on - strand, within GFF1976 at 18.833 kb on - strand, within GFF1976 at 18.833 kb on - strand, within GFF1976 at 18.833 kb on - strand, within GFF1976 at 18.922 kb on + strand, within GFF1976 at 18.922 kb on + strand, within GFF1976 at 18.923 kb on - strand, within GFF1976 at 18.923 kb on - strand, within GFF1976 at 18.923 kb on - strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.946 kb on + strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.947 kb on - strand, within GFF1976 at 18.949 kb on + strand, within GFF1976 at 18.949 kb on + strand, within GFF1976 at 18.950 kb on - strand, within GFF1976 at 18.950 kb on - strand, within GFF1976 at 18.950 kb on - strand, within GFF1976 at 18.950 kb on - strand, within GFF1976 at 18.950 kb on - strand, within GFF1976 at 19.209 kb on + strand at 19.209 kb on + strand at 19.209 kb on + strand at 19.209 kb on + strand at 19.209 kb on + strand at 19.210 kb on - strand at 19.210 kb on - strand at 19.210 kb on - strand at 19.210 kb on - strand at 19.210 kb on - strand at 19.229 kb on + strand at 19.229 kb on + strand at 19.229 kb on + strand at 19.229 kb on + strand at 19.230 kb on - strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.276 kb on + strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.277 kb on - strand at 19.298 kb on - strand at 19.298 kb on - strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.327 kb on + strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand at 19.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 16,237 + GFF1973 0.22 +1.7 16,237 + GFF1973 0.22 -1.0 16,237 + GFF1973 0.22 -0.1 16,238 - GFF1973 0.22 -0.2 16,238 - GFF1973 0.22 +0.8 16,238 - GFF1973 0.22 +0.8 16,238 - GFF1973 0.22 -0.6 16,273 + GFF1973 0.28 +0.7 16,273 + GFF1973 0.28 +0.5 16,273 + GFF1973 0.28 +1.2 16,273 + GFF1973 0.28 +0.3 16,273 + GFF1973 0.28 +1.2 16,273 + GFF1973 0.28 -0.2 16,273 + GFF1973 0.28 +0.3 16,273 + GFF1973 0.28 -0.6 16,273 + GFF1973 0.28 -0.2 16,273 + GFF1973 0.28 -0.8 16,273 + GFF1973 0.28 -0.4 16,273 + GFF1973 0.28 -1.3 16,273 + GFF1973 0.28 -0.2 16,274 - GFF1973 0.28 -0.1 16,274 - GFF1973 0.28 -1.6 16,274 - GFF1973 0.28 +0.4 16,274 - GFF1973 0.28 +0.1 16,274 - GFF1973 0.28 +0.2 16,274 - GFF1973 0.28 +0.3 16,274 - GFF1973 0.28 +0.2 16,274 - GFF1973 0.28 -0.2 16,274 - GFF1973 0.28 +1.2 16,274 - GFF1973 0.28 -0.2 16,274 - GFF1973 0.28 -0.3 16,274 - GFF1973 0.28 -0.4 16,274 - GFF1973 0.28 +0.2 16,274 - GFF1973 0.28 +0.0 16,274 - GFF1973 0.28 +0.5 16,274 - GFF1973 0.28 -0.2 16,274 - GFF1973 0.28 -0.5 16,300 + GFF1973 0.33 -0.7 16,300 + GFF1973 0.33 -0.6 16,301 - GFF1973 0.33 +0.7 16,406 - GFF1973 0.51 -0.9 16,489 + GFF1973 0.65 +1.7 16,489 + GFF1973 0.65 +0.3 16,528 + GFF1973 0.72 -0.6 16,576 + GFF1973 0.80 +0.1 16,576 + GFF1973 0.80 -1.7 16,676 - -1.1 16,711 + -1.0 16,711 + +0.5 16,712 - -0.5 16,734 - -0.3 16,734 - -0.4 16,864 - -0.6 16,864 - +0.3 16,864 - -0.5 16,864 - +0.5 17,053 + GFF1974 0.58 -0.8 17,053 + GFF1974 0.58 +0.4 17,053 + GFF1974 0.58 -0.5 17,053 + GFF1974 0.58 -0.4 17,059 + GFF1974 0.60 +0.3 17,108 - GFF1974 0.75 -0.4 17,185 + -1.5 17,185 + -1.4 17,185 + +0.0 17,186 - -0.6 17,186 - -0.8 17,186 - -0.3 17,311 + -0.5 17,311 + +0.3 17,312 - -0.1 17,312 - -2.3 17,401 + GFF1975 0.17 -1.3 17,401 + GFF1975 0.17 +1.2 17,437 + GFF1975 0.20 -0.6 17,438 - GFF1975 0.20 +0.4 17,438 - GFF1975 0.20 +0.7 17,438 - GFF1975 0.20 -0.1 17,443 + GFF1975 0.21 -2.0 17,582 - GFF1975 0.33 -1.1 17,620 + GFF1975 0.37 -0.2 17,620 + GFF1975 0.37 +0.3 17,620 + GFF1975 0.37 -0.0 17,620 + GFF1975 0.37 -0.6 17,620 + GFF1975 0.37 -0.7 17,621 - GFF1975 0.37 +0.7 17,621 - GFF1975 0.37 -0.1 17,621 - GFF1975 0.37 -0.1 17,621 - GFF1975 0.37 -0.1 17,698 + GFF1975 0.44 -0.6 17,698 + GFF1975 0.44 -0.1 17,698 + GFF1975 0.44 -0.1 17,698 + GFF1975 0.44 -0.3 17,699 - GFF1975 0.44 +0.3 17,699 - GFF1975 0.44 +1.4 17,740 + GFF1975 0.47 +1.2 17,740 + GFF1975 0.47 +1.4 17,740 + GFF1975 0.47 +0.4 17,740 + GFF1975 0.47 +0.1 17,740 + GFF1975 0.47 +0.7 17,741 - GFF1975 0.47 -0.5 17,741 - GFF1975 0.47 -0.1 17,741 - GFF1975 0.47 -0.6 17,741 - GFF1975 0.47 -0.5 17,741 - GFF1975 0.47 -0.6 17,741 - GFF1975 0.47 -0.6 17,908 + GFF1975 0.62 -0.3 17,908 + GFF1975 0.62 -1.0 17,909 - GFF1975 0.62 +0.5 17,923 + GFF1975 0.64 +1.2 17,923 + GFF1975 0.64 +0.2 17,924 - GFF1975 0.64 -0.5 17,924 - GFF1975 0.64 +0.6 17,924 - GFF1975 0.64 -0.2 17,924 - GFF1975 0.64 +1.7 17,929 + GFF1975 0.64 +0.1 17,929 + GFF1975 0.64 +1.2 17,930 - GFF1975 0.64 +0.3 17,930 - GFF1975 0.64 -0.5 17,935 + GFF1975 0.65 -0.1 17,935 + GFF1975 0.65 +0.7 17,935 + GFF1975 0.65 +0.6 17,935 + GFF1975 0.65 -0.3 17,936 - GFF1975 0.65 +1.0 17,936 - GFF1975 0.65 -0.4 18,013 + GFF1975 0.72 -0.3 18,013 + GFF1975 0.72 -0.8 18,013 + GFF1975 0.72 -0.2 18,055 + GFF1975 0.75 +0.5 18,055 + GFF1975 0.75 -1.0 18,055 + GFF1975 0.75 -0.1 18,055 + GFF1975 0.75 -0.1 18,056 - GFF1975 0.76 -1.0 18,056 - GFF1975 0.76 +0.2 18,118 + GFF1975 0.81 +0.0 18,119 - GFF1975 0.81 +1.0 18,119 - GFF1975 0.81 -0.3 18,119 - GFF1975 0.81 +1.4 18,119 - GFF1975 0.81 -0.1 18,119 - GFF1975 0.81 +0.0 18,124 + GFF1975 0.82 +0.2 18,124 + GFF1975 0.82 -0.6 18,124 + GFF1975 0.82 +0.7 18,124 + GFF1975 0.82 -0.1 18,125 - GFF1975 0.82 +0.2 18,125 - GFF1975 0.82 -0.6 18,125 - GFF1975 0.82 +0.0 18,125 - GFF1975 0.82 +0.3 18,396 + -1.9 18,397 - -0.5 18,397 - -1.3 18,397 - -0.2 18,427 + +0.4 18,427 + +0.0 18,428 - +0.2 18,428 - +0.7 18,428 - -1.0 18,428 - +0.4 18,428 - -0.2 18,471 + -0.6 18,471 + -1.3 18,472 - -0.6 18,485 - -0.5 18,485 - -0.3 18,598 + GFF1976 0.15 +0.0 18,598 + GFF1976 0.15 +0.7 18,599 - GFF1976 0.15 +0.3 18,599 - GFF1976 0.15 -0.3 18,599 - GFF1976 0.15 -0.3 18,607 + GFF1976 0.16 +0.6 18,607 + GFF1976 0.16 +0.4 18,607 + GFF1976 0.16 +0.2 18,607 + GFF1976 0.16 +0.3 18,607 + GFF1976 0.16 +0.2 18,608 - GFF1976 0.16 -0.9 18,608 - GFF1976 0.16 +0.2 18,608 - GFF1976 0.16 -0.4 18,608 - GFF1976 0.16 +0.0 18,608 - GFF1976 0.16 -0.0 18,608 - GFF1976 0.16 -1.3 18,737 - GFF1976 0.32 +0.2 18,832 + GFF1976 0.44 -0.5 18,832 + GFF1976 0.44 -0.4 18,832 + GFF1976 0.44 -0.3 18,833 - GFF1976 0.44 -1.0 18,833 - GFF1976 0.44 +0.5 18,833 - GFF1976 0.44 +0.4 18,833 - GFF1976 0.44 -0.7 18,833 - GFF1976 0.44 -0.0 18,922 + GFF1976 0.55 -0.6 18,922 + GFF1976 0.55 +0.5 18,923 - GFF1976 0.56 -0.8 18,923 - GFF1976 0.56 +1.2 18,923 - GFF1976 0.56 -0.3 18,946 + GFF1976 0.58 +0.4 18,946 + GFF1976 0.58 +1.2 18,946 + GFF1976 0.58 -0.8 18,946 + GFF1976 0.58 +0.7 18,946 + GFF1976 0.58 -1.1 18,946 + GFF1976 0.58 +1.7 18,946 + GFF1976 0.58 -0.4 18,946 + GFF1976 0.58 -0.0 18,946 + GFF1976 0.58 -0.2 18,947 - GFF1976 0.59 -0.5 18,947 - GFF1976 0.59 -0.3 18,947 - GFF1976 0.59 -0.1 18,947 - GFF1976 0.59 -0.5 18,947 - GFF1976 0.59 -1.0 18,947 - GFF1976 0.59 +0.2 18,949 + GFF1976 0.59 -0.0 18,949 + GFF1976 0.59 +0.0 18,950 - GFF1976 0.59 +0.9 18,950 - GFF1976 0.59 -0.5 18,950 - GFF1976 0.59 -1.0 18,950 - GFF1976 0.59 +0.0 18,950 - GFF1976 0.59 -0.3 19,209 + -0.8 19,209 + -0.9 19,209 + +0.2 19,209 + +0.4 19,209 + -0.7 19,210 - -0.7 19,210 - -0.1 19,210 - -0.3 19,210 - +0.2 19,210 - -0.4 19,229 + -0.1 19,229 + -1.6 19,229 + -0.2 19,229 + -1.0 19,230 - -0.6 19,276 + +0.5 19,276 + -0.3 19,276 + -0.0 19,276 + -0.4 19,276 + +0.4 19,276 + -1.1 19,276 + -0.3 19,276 + +0.2 19,277 - +0.4 19,277 - -0.3 19,277 - -1.1 19,277 - -0.1 19,277 - -0.3 19,277 - -0.2 19,277 - +0.5 19,298 - +1.2 19,298 - -0.3 19,327 + +0.5 19,327 + -0.0 19,327 + -0.1 19,327 + +1.7 19,327 + -0.5 19,327 + -0.9 19,327 + -0.3 19,327 + -0.3 19,327 + +1.0 19,327 + -1.8 19,327 + -0.6 19,327 + -0.2 19,327 + -0.8 19,327 + -0.2 19,328 - +1.7 19,328 - -1.4 19,328 - -0.1 19,328 - -0.5 19,328 - -0.1 19,328 - +0.0 19,328 - +0.4 19,328 - -0.7 19,328 - +1.0 19,328 - -0.5 19,328 - +0.1 19,328 - -0.3 19,328 - -1.3
Or see this region's nucleotide sequence