Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1927 and GFF1928 are separated by 100 nucleotides GFF1928 and GFF1929 are separated by 85 nucleotides GFF1929 and GFF1930 are separated by 256 nucleotides
GFF1927 - Alkanesulfonates-binding protein, at 607,455 to 608,435
GFF1927
GFF1928 - Fumarylacetoacetate hydrolase family protein, at 608,536 to 609,225
GFF1928
GFF1929 - Transcriptional regulator, AraC family, at 609,311 to 610,228
GFF1929
GFF1930 - RTX toxin transporter, ATP-binding protein, at 610,485 to 612,728
GFF1930
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 608.464 kb on + strand at 608.464 kb on + strand at 608.465 kb on - strand at 608.470 kb on - strand at 608.470 kb on - strand at 608.490 kb on + strand at 608.491 kb on - strand at 608.545 kb on + strand at 608.545 kb on + strand at 608.546 kb on - strand at 608.546 kb on - strand at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.846 kb on - strand, within GFF1928 at 609.085 kb on + strand, within GFF1928 at 609.271 kb on - strand at 609.271 kb on - strand at 609.273 kb on + strand at 609.273 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.434 kb on + strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.572 kb on + strand, within GFF1929 at 609.572 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.693 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.995 kb on + strand, within GFF1929 at 610.207 kb on + strand at 610.208 kb on - strand at 610.226 kb on + strand at 610.227 kb on - strand at 610.227 kb on - strand at 610.304 kb on - strand at 610.368 kb on - strand at 610.392 kb on - strand at 610.392 kb on - strand at 610.427 kb on + strand at 610.460 kb on + strand at 610.463 kb on + strand at 610.469 kb on - strand at 610.493 kb on - strand at 611.173 kb on + strand, within GFF1930
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 608,464 + -0.2 608,464 + +1.8 608,465 - -0.4 608,470 - +0.2 608,470 - -0.6 608,490 + +0.4 608,491 - -1.2 608,545 + +0.2 608,545 + +3.6 608,546 - +0.2 608,546 - -0.6 608,638 + GFF1928 0.15 -2.1 608,638 + GFF1928 0.15 -0.5 608,638 + GFF1928 0.15 -0.7 608,846 - GFF1928 0.45 -0.4 609,085 + GFF1928 0.80 -1.0 609,271 - -0.1 609,271 - -0.2 609,273 + +0.4 609,273 + +0.5 609,344 + -0.2 609,344 + -0.6 609,344 + +0.3 609,344 + +1.2 609,345 - +0.2 609,345 - +0.1 609,345 - -1.0 609,434 + GFF1929 0.13 -0.2 609,435 - GFF1929 0.14 -1.0 609,435 - GFF1929 0.14 +0.2 609,435 - GFF1929 0.14 -0.2 609,572 + GFF1929 0.28 -1.2 609,572 + GFF1929 0.28 +0.2 609,692 + GFF1929 0.42 +0.2 609,692 + GFF1929 0.42 -0.9 609,693 - GFF1929 0.42 -0.2 609,924 - GFF1929 0.67 +1.2 609,924 - GFF1929 0.67 +0.3 609,924 - GFF1929 0.67 -1.0 609,995 + GFF1929 0.75 -0.9 610,207 + -0.1 610,208 - +0.2 610,226 + -0.5 610,227 - -0.2 610,227 - -0.6 610,304 - +1.0 610,368 - -1.1 610,392 - -0.5 610,392 - -1.3 610,427 + -1.2 610,460 + -1.4 610,463 + -1.0 610,469 - -0.2 610,493 - +0.1 611,173 + GFF1930 0.31 +1.1
Or see this region's nucleotide sequence