Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1888 and GFF1889 are separated by 30 nucleotides GFF1889 and GFF1890 are separated by 21 nucleotides
GFF1888 - BUG/TctC family periplasmic protein, at 564,043 to 565,032
GFF1888
GFF1889 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, at 565,063 to 566,451
GFF1889
GFF1890 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 566,473 to 567,855
GFF1890
Position (kb) 565
566
567 Strain fitness (log2 ratio) -1
0
1 at 564.132 kb on - strand at 564.132 kb on - strand at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.155 kb on - strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.260 kb on + strand, within GFF1888 at 564.261 kb on - strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.474 kb on - strand, within GFF1888 at 564.699 kb on - strand, within GFF1888 at 564.714 kb on - strand, within GFF1888 at 565.479 kb on - strand, within GFF1889 at 565.757 kb on + strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 566.377 kb on + strand at 566.537 kb on + strand at 566.537 kb on + strand at 566.538 kb on - strand at 566.538 kb on - strand at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.029 kb on + strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.030 kb on - strand, within GFF1890 at 567.335 kb on + strand, within GFF1890
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 564,132 - +0.2 564,132 - -0.8 564,154 + GFF1888 0.11 +0.5 564,154 + GFF1888 0.11 +0.3 564,154 + GFF1888 0.11 +0.4 564,154 + GFF1888 0.11 -0.6 564,155 - GFF1888 0.11 +0.6 564,209 + GFF1888 0.17 +0.2 564,209 + GFF1888 0.17 -0.3 564,209 + GFF1888 0.17 -0.5 564,260 + GFF1888 0.22 +0.2 564,261 - GFF1888 0.22 -0.8 564,473 + GFF1888 0.43 +1.6 564,473 + GFF1888 0.43 -0.0 564,473 + GFF1888 0.43 +1.0 564,474 - GFF1888 0.44 -0.4 564,699 - GFF1888 0.66 -0.7 564,714 - GFF1888 0.68 -0.3 565,479 - GFF1889 0.30 -1.2 565,757 + GFF1889 0.50 -0.3 565,758 - GFF1889 0.50 -0.7 565,758 - GFF1889 0.50 -0.5 565,758 - GFF1889 0.50 -0.7 565,758 - GFF1889 0.50 +0.2 565,758 - GFF1889 0.50 -0.0 566,377 + +0.3 566,537 + +0.2 566,537 + +0.3 566,538 - +0.8 566,538 - -0.4 567,029 + GFF1890 0.40 -1.5 567,029 + GFF1890 0.40 +0.3 567,029 + GFF1890 0.40 -0.4 567,030 - GFF1890 0.40 -0.7 567,030 - GFF1890 0.40 +0.2 567,030 - GFF1890 0.40 +0.4 567,030 - GFF1890 0.40 +0.4 567,030 - GFF1890 0.40 -0.5 567,335 + GFF1890 0.62 -0.8
Or see this region's nucleotide sequence