Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1883 and GFF1884 are separated by 11 nucleotides GFF1884 and GFF1885 are separated by 0 nucleotides GFF1885 and GFF1886 are separated by 124 nucleotides
GFF1883 - putative signal-transduction protein with CBS domains, at 558,101 to 558,538
GFF1883
GFF1884 - Gluconokinase (EC 2.7.1.12), at 558,550 to 559,071
GFF1884
GFF1885 - Gluconate transporter family protein, at 559,072 to 560,454
GFF1885
GFF1886 - Elongation factor G-like protein TM_1651, at 560,579 to 562,639
GFF1886
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1 at 558.874 kb on + strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 559.070 kb on - strand at 559.070 kb on - strand at 559.285 kb on + strand, within GFF1885 at 559.285 kb on + strand, within GFF1885 at 559.286 kb on - strand, within GFF1885 at 559.286 kb on - strand, within GFF1885 at 560.277 kb on - strand, within GFF1885 at 560.347 kb on + strand at 560.348 kb on - strand at 560.957 kb on + strand, within GFF1886 at 560.957 kb on + strand, within GFF1886 at 560.958 kb on - strand, within GFF1886 at 561.222 kb on - strand, within GFF1886
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 558,874 + GFF1884 0.62 -0.8 558,875 - GFF1884 0.62 -0.6 558,875 - GFF1884 0.62 -0.1 559,070 - -0.0 559,070 - -1.2 559,285 + GFF1885 0.15 -0.2 559,285 + GFF1885 0.15 -0.1 559,286 - GFF1885 0.15 +0.1 559,286 - GFF1885 0.15 +1.4 560,277 - GFF1885 0.87 -2.2 560,347 + -0.7 560,348 - +0.6 560,957 + GFF1886 0.18 -0.3 560,957 + GFF1886 0.18 -0.2 560,958 - GFF1886 0.18 +0.5 561,222 - GFF1886 0.31 -0.4
Or see this region's nucleotide sequence