Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF174 and GFF175 are separated by 36 nucleotides GFF175 and GFF176 overlap by 1 nucleotides GFF176 and GFF177 overlap by 4 nucleotides GFF177 and GFF178 are separated by 39 nucleotides
GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258
GFF174
GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960
GFF175
GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619
GFF176
GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386
GFF177
GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637
GFF178
Position (kb) 206
207
208 Strain fitness (log2 ratio) -1
0
1
2 at 206.176 kb on - strand at 206.176 kb on - strand at 206.334 kb on + strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.430 kb on + strand, within GFF175 at 206.456 kb on + strand, within GFF175 at 206.456 kb on + strand, within GFF175 at 206.457 kb on - strand, within GFF175 at 206.457 kb on - strand, within GFF175 at 206.457 kb on - strand, within GFF175 at 206.466 kb on + strand, within GFF175 at 206.466 kb on + strand, within GFF175 at 206.466 kb on + strand, within GFF175 at 206.466 kb on + strand, within GFF175 at 206.467 kb on - strand, within GFF175 at 206.467 kb on - strand, within GFF175 at 206.467 kb on - strand, within GFF175 at 206.467 kb on - strand, within GFF175 at 206.517 kb on + strand, within GFF175 at 206.517 kb on + strand, within GFF175 at 206.518 kb on - strand, within GFF175 at 206.518 kb on - strand, within GFF175 at 206.601 kb on + strand, within GFF175 at 206.601 kb on + strand, within GFF175 at 206.601 kb on + strand, within GFF175 at 206.602 kb on - strand, within GFF175 at 206.602 kb on - strand, within GFF175 at 206.602 kb on - strand, within GFF175 at 206.602 kb on - strand, within GFF175 at 206.844 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.928 kb on + strand at 206.928 kb on + strand at 206.928 kb on + strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.996 kb on + strand at 206.997 kb on - strand at 207.173 kb on + strand, within GFF176 at 207.173 kb on + strand, within GFF176 at 207.174 kb on - strand, within GFF176 at 207.185 kb on + strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.266 kb on + strand, within GFF176 at 207.267 kb on - strand, within GFF176 at 207.267 kb on - strand, within GFF176 at 207.548 kb on + strand, within GFF176 at 207.548 kb on + strand, within GFF176 at 207.549 kb on - strand, within GFF176 at 207.549 kb on - strand, within GFF176 at 207.591 kb on + strand at 207.591 kb on + strand at 207.591 kb on + strand at 207.664 kb on + strand at 207.664 kb on + strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.686 kb on - strand at 208.170 kb on - strand, within GFF177 at 208.170 kb on - strand, within GFF177 at 208.418 kb on + strand at 208.418 kb on + strand at 208.418 kb on + strand at 208.418 kb on + strand at 208.419 kb on - strand at 208.562 kb on - strand, within GFF178
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 206,176 - -0.3 206,176 - +0.1 206,334 + -0.4 206,335 - -0.0 206,335 - +0.7 206,430 + GFF175 0.20 +0.4 206,456 + GFF175 0.24 +1.6 206,456 + GFF175 0.24 -0.6 206,457 - GFF175 0.24 -0.8 206,457 - GFF175 0.24 -0.4 206,457 - GFF175 0.24 -1.6 206,466 + GFF175 0.26 +0.5 206,466 + GFF175 0.26 -1.4 206,466 + GFF175 0.26 +0.2 206,466 + GFF175 0.26 -1.0 206,467 - GFF175 0.26 +1.6 206,467 - GFF175 0.26 -1.0 206,467 - GFF175 0.26 -0.0 206,467 - GFF175 0.26 -0.3 206,517 + GFF175 0.33 -0.4 206,517 + GFF175 0.33 -0.1 206,518 - GFF175 0.33 -0.5 206,518 - GFF175 0.33 -0.4 206,601 + GFF175 0.46 -1.0 206,601 + GFF175 0.46 +1.6 206,601 + GFF175 0.46 +0.1 206,602 - GFF175 0.46 -0.5 206,602 - GFF175 0.46 +0.4 206,602 - GFF175 0.46 -0.4 206,602 - GFF175 0.46 -0.1 206,844 + GFF175 0.82 -0.0 206,883 + GFF175 0.88 +0.1 206,883 + GFF175 0.88 +0.2 206,883 + GFF175 0.88 +0.5 206,883 + GFF175 0.88 +1.9 206,883 + GFF175 0.88 -0.5 206,884 - GFF175 0.88 -0.2 206,884 - GFF175 0.88 +0.0 206,884 - GFF175 0.88 -0.9 206,884 - GFF175 0.88 +0.1 206,884 - GFF175 0.88 -0.4 206,884 - GFF175 0.88 -1.0 206,884 - GFF175 0.88 -0.4 206,928 + -0.5 206,928 + -1.7 206,928 + +0.4 206,929 - -1.4 206,929 - +0.8 206,929 - -0.0 206,929 - -0.6 206,929 - -0.1 206,996 + +0.1 206,997 - -0.2 207,173 + GFF176 0.32 -1.0 207,173 + GFF176 0.32 +1.1 207,174 - GFF176 0.32 -1.0 207,185 + GFF176 0.34 -0.7 207,186 - GFF176 0.34 +0.6 207,186 - GFF176 0.34 -1.2 207,186 - GFF176 0.34 -0.3 207,186 - GFF176 0.34 -0.2 207,266 + GFF176 0.46 -0.4 207,267 - GFF176 0.47 +0.3 207,267 - GFF176 0.47 -1.2 207,548 + GFF176 0.89 -0.7 207,548 + GFF176 0.89 -0.3 207,549 - GFF176 0.89 -0.2 207,549 - GFF176 0.89 -1.4 207,591 + -0.6 207,591 + -0.4 207,591 + -0.2 207,664 + -0.0 207,664 + +1.3 207,665 - +0.9 207,665 - +0.5 207,665 - -0.3 207,665 - -0.2 207,685 + +0.2 207,685 + -0.2 207,685 + -0.5 207,685 + +0.4 207,686 - -0.8 208,170 - GFF177 0.72 -0.1 208,170 - GFF177 0.72 +1.1 208,418 + -0.4 208,418 + +0.1 208,418 + +1.9 208,418 + -0.9 208,419 - -0.1 208,562 - GFF178 0.11 -0.4
Or see this region's nucleotide sequence