Strain Fitness in Variovorax sp. SCN45 around GFF1752

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1751 and GFF1752 are separated by 88 nucleotidesGFF1752 and GFF1753 are separated by 106 nucleotides GFF1751 - Rhodanese-related sulfurtransferase, 4 domains, at 411,788 to 413,371 GFF1751 GFF1752 - Cysteine dioxygenase (EC 1.13.11.20), at 413,460 to 414,050 GFF1752 GFF1753 - LysR family transcriptional regulator lrhA, at 414,157 to 415,050 GFF1753 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2 3at 412.734 kb on + strand, within GFF1751at 413.001 kb on + strand, within GFF1751at 413.179 kb on - strand, within GFF1751at 413.259 kb on + strandat 413.260 kb on - strandat 413.260 kb on - strandat 413.260 kb on - strandat 413.497 kb on + strandat 413.497 kb on + strandat 413.498 kb on - strandat 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.713 kb on + strand, within GFF1752at 413.713 kb on + strand, within GFF1752at 413.785 kb on + strand, within GFF1752at 413.812 kb on + strand, within GFF1752at 413.813 kb on - strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.852 kb on - strand, within GFF1752at 413.905 kb on + strand, within GFF1752at 413.905 kb on + strand, within GFF1752at 414.094 kb on + strandat 414.095 kb on - strandat 414.162 kb on + strandat 414.163 kb on - strandat 414.364 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.550 kb on + strand, within GFF1753at 414.550 kb on + strand, within GFF1753at 414.551 kb on - strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.790 kb on + strand, within GFF1753at 414.790 kb on + strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.931 kb on + strand, within GFF1753at 414.931 kb on + strand, within GFF1753at 414.932 kb on - strand, within GFF1753at 414.932 kb on - strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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412,734 + GFF1751 0.60 -1.4
413,001 + GFF1751 0.77 +0.5
413,179 - GFF1751 0.88 -0.1
413,259 + -0.4
413,260 - -0.7
413,260 - -0.6
413,260 - -0.1
413,497 + +0.6
413,497 + +0.4
413,498 - +0.5
413,557 + GFF1752 0.16 +0.3
413,557 + GFF1752 0.16 -1.0
413,557 + GFF1752 0.16 +0.1
413,557 + GFF1752 0.16 -0.4
413,558 - GFF1752 0.17 -2.1
413,558 - GFF1752 0.17 -0.7
413,558 - GFF1752 0.17 -0.8
413,713 + GFF1752 0.43 -0.7
413,713 + GFF1752 0.43 +0.1
413,785 + GFF1752 0.55 -0.1
413,812 + GFF1752 0.60 -0.7
413,813 - GFF1752 0.60 -0.4
413,821 + GFF1752 0.61 +0.6
413,821 + GFF1752 0.61 +0.2
413,821 + GFF1752 0.61 -0.5
413,821 + GFF1752 0.61 -0.5
413,821 + GFF1752 0.61 -0.6
413,822 - GFF1752 0.61 +0.1
413,822 - GFF1752 0.61 -0.8
413,822 - GFF1752 0.61 -0.2
413,822 - GFF1752 0.61 +0.2
413,822 - GFF1752 0.61 +0.4
413,822 - GFF1752 0.61 -0.3
413,822 - GFF1752 0.61 -1.1
413,852 - GFF1752 0.66 +0.2
413,905 + GFF1752 0.75 -0.1
413,905 + GFF1752 0.75 -0.3
414,094 + +0.2
414,095 - +0.4
414,162 + +0.2
414,163 - -1.7
414,364 + GFF1753 0.23 +0.2
414,375 + GFF1753 0.24 +0.2
414,375 + GFF1753 0.24 -0.7
414,375 + GFF1753 0.24 -0.2
414,375 + GFF1753 0.24 -1.7
414,375 + GFF1753 0.24 +0.6
414,375 + GFF1753 0.24 +1.2
414,375 + GFF1753 0.24 -0.1
414,375 + GFF1753 0.24 -0.1
414,375 + GFF1753 0.24 +1.8
414,376 - GFF1753 0.24 -0.0
414,376 - GFF1753 0.24 +0.1
414,376 - GFF1753 0.24 -0.4
414,376 - GFF1753 0.24 -0.5
414,376 - GFF1753 0.24 -0.7
414,376 - GFF1753 0.24 -0.1
414,376 - GFF1753 0.24 -0.7
414,376 - GFF1753 0.24 -1.3
414,376 - GFF1753 0.24 +0.4
414,376 - GFF1753 0.24 -0.2
414,550 + GFF1753 0.44 +0.6
414,550 + GFF1753 0.44 -1.6
414,551 - GFF1753 0.44 -0.6
414,676 + GFF1753 0.58 -0.7
414,676 + GFF1753 0.58 -0.5
414,676 + GFF1753 0.58 -1.2
414,676 + GFF1753 0.58 +0.3
414,676 + GFF1753 0.58 -0.4
414,676 + GFF1753 0.58 -0.8
414,676 + GFF1753 0.58 +0.6
414,676 + GFF1753 0.58 -0.0
414,676 + GFF1753 0.58 +2.8
414,677 - GFF1753 0.58 +0.2
414,677 - GFF1753 0.58 -0.1
414,677 - GFF1753 0.58 -0.8
414,677 - GFF1753 0.58 -0.6
414,790 + GFF1753 0.71 +0.4
414,790 + GFF1753 0.71 +0.1
414,791 - GFF1753 0.71 -0.7
414,791 - GFF1753 0.71 -0.5
414,791 - GFF1753 0.71 +0.8
414,931 + GFF1753 0.87 +1.0
414,931 + GFF1753 0.87 -0.2
414,932 - GFF1753 0.87 -0.1
414,932 - GFF1753 0.87 +0.8
414,940 + GFF1753 0.88 +0.3
414,940 + GFF1753 0.88 -0.1
414,940 + GFF1753 0.88 -1.3
414,940 + GFF1753 0.88 +0.4
414,940 + GFF1753 0.88 -1.3
414,940 + GFF1753 0.88 -0.1
414,940 + GFF1753 0.88 -0.2
414,940 + GFF1753 0.88 +0.8
414,940 + GFF1753 0.88 +0.0
414,940 + GFF1753 0.88 +0.2
414,940 + GFF1753 0.88 -0.8
414,941 - GFF1753 0.88 -1.1
414,941 - GFF1753 0.88 -0.6
414,941 - GFF1753 0.88 -0.4
414,941 - GFF1753 0.88 -0.4
414,941 - GFF1753 0.88 -1.2
414,941 - GFF1753 0.88 +0.2
414,941 - GFF1753 0.88 +0.4
414,941 - GFF1753 0.88 +0.1
414,941 - GFF1753 0.88 +0.2
414,941 - GFF1753 0.88 -1.1

Or see this region's nucleotide sequence