Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1692 and GFF1693 are separated by 102 nucleotides GFF1693 and GFF1694 are separated by 65 nucleotides GFF1694 and GFF1695 are separated by 9 nucleotides GFF1695 and GFF1696 are separated by 263 nucleotides
GFF1692 - Two-component system sensor histidine kinase, at 337,118 to 339,070
GFF1692
GFF1693 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 339,173 to 339,922
GFF1693
GFF1694 - Na+/H+-dicarboxylate symporter, at 339,988 to 341,337
GFF1694
GFF1695 - no description, at 341,347 to 341,508
GFF1695
GFF1696 - Transcriptional regulator, LysR family, at 341,772 to 342,632
GFF1696
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 339.122 kb on + strand at 339.133 kb on + strand at 339.134 kb on - strand at 339.151 kb on - strand at 339.247 kb on - strand at 339.363 kb on + strand, within GFF1693 at 339.364 kb on - strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.460 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.817 kb on - strand, within GFF1693 at 339.834 kb on + strand, within GFF1693 at 339.835 kb on - strand, within GFF1693 at 339.947 kb on + strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand at 340.326 kb on + strand, within GFF1694 at 340.326 kb on + strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.327 kb on - strand, within GFF1694 at 340.425 kb on - strand, within GFF1694 at 340.553 kb on + strand, within GFF1694 at 340.553 kb on + strand, within GFF1694 at 340.553 kb on + strand, within GFF1694 at 340.553 kb on + strand, within GFF1694 at 340.553 kb on + strand, within GFF1694 at 340.637 kb on + strand, within GFF1694 at 340.637 kb on + strand, within GFF1694 at 340.637 kb on + strand, within GFF1694 at 340.638 kb on - strand, within GFF1694 at 340.638 kb on - strand, within GFF1694 at 340.686 kb on - strand, within GFF1694 at 340.686 kb on - strand, within GFF1694 at 340.686 kb on - strand, within GFF1694 at 340.686 kb on - strand, within GFF1694 at 340.745 kb on + strand, within GFF1694 at 340.745 kb on + strand, within GFF1694 at 340.745 kb on + strand, within GFF1694 at 340.746 kb on - strand, within GFF1694 at 340.958 kb on + strand, within GFF1694 at 340.959 kb on - strand, within GFF1694 at 341.079 kb on - strand, within GFF1694 at 341.238 kb on - strand at 341.288 kb on + strand at 341.288 kb on + strand at 341.300 kb on + strand at 341.300 kb on + strand at 341.300 kb on + strand at 341.300 kb on + strand at 341.301 kb on - strand at 341.301 kb on - strand at 341.301 kb on - strand at 341.301 kb on - strand at 341.301 kb on - strand at 341.720 kb on + strand at 341.720 kb on + strand at 341.720 kb on + strand at 341.721 kb on - strand at 341.729 kb on + strand at 341.730 kb on - strand at 341.773 kb on + strand at 341.774 kb on - strand at 341.774 kb on - strand at 341.774 kb on - strand at 341.992 kb on + strand, within GFF1696 at 342.022 kb on + strand, within GFF1696 at 342.023 kb on - strand, within GFF1696
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 339,122 + +0.3 339,133 + -0.3 339,134 - -0.4 339,151 - -1.1 339,247 - -1.2 339,363 + GFF1693 0.25 -0.8 339,364 - GFF1693 0.25 -0.2 339,459 + GFF1693 0.38 +0.8 339,459 + GFF1693 0.38 -0.2 339,459 + GFF1693 0.38 -0.4 339,459 + GFF1693 0.38 +0.3 339,459 + GFF1693 0.38 -0.8 339,460 - GFF1693 0.38 -0.1 339,724 - GFF1693 0.73 +0.2 339,724 - GFF1693 0.73 +0.1 339,816 + GFF1693 0.86 -0.4 339,816 + GFF1693 0.86 +0.2 339,817 - GFF1693 0.86 -1.9 339,834 + GFF1693 0.88 -0.2 339,835 - GFF1693 0.88 +1.3 339,947 + -1.3 339,948 - -0.3 339,948 - -0.1 339,948 - -0.6 339,948 - -0.7 340,326 + GFF1694 0.25 +0.8 340,326 + GFF1694 0.25 +1.2 340,327 - GFF1694 0.25 +0.5 340,327 - GFF1694 0.25 -1.0 340,327 - GFF1694 0.25 +1.2 340,327 - GFF1694 0.25 -0.4 340,327 - GFF1694 0.25 +0.2 340,327 - GFF1694 0.25 +0.2 340,425 - GFF1694 0.32 -0.4 340,553 + GFF1694 0.42 -1.7 340,553 + GFF1694 0.42 +0.2 340,553 + GFF1694 0.42 +0.6 340,553 + GFF1694 0.42 +0.6 340,553 + GFF1694 0.42 -0.5 340,637 + GFF1694 0.48 +1.0 340,637 + GFF1694 0.48 +1.8 340,637 + GFF1694 0.48 -1.2 340,638 - GFF1694 0.48 -0.7 340,638 - GFF1694 0.48 +0.3 340,686 - GFF1694 0.52 -0.8 340,686 - GFF1694 0.52 -1.2 340,686 - GFF1694 0.52 +0.3 340,686 - GFF1694 0.52 -1.4 340,745 + GFF1694 0.56 -0.7 340,745 + GFF1694 0.56 -0.8 340,745 + GFF1694 0.56 -0.6 340,746 - GFF1694 0.56 -0.5 340,958 + GFF1694 0.72 -0.7 340,959 - GFF1694 0.72 -0.3 341,079 - GFF1694 0.81 -0.1 341,238 - -0.1 341,288 + -0.5 341,288 + -1.2 341,300 + -0.4 341,300 + +0.5 341,300 + -0.7 341,300 + -1.6 341,301 - -0.4 341,301 - -1.6 341,301 - -0.1 341,301 - -0.1 341,301 - -0.2 341,720 + +0.4 341,720 + -0.2 341,720 + +0.9 341,721 - -0.5 341,729 + -0.4 341,730 - -0.4 341,773 + -0.6 341,774 - +0.3 341,774 - -1.1 341,774 - -0.5 341,992 + GFF1696 0.26 -0.1 342,022 + GFF1696 0.29 +0.9 342,023 - GFF1696 0.29 -1.1
Or see this region's nucleotide sequence