Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1691 and GFF1692 are separated by 7 nucleotides GFF1692 and GFF1693 are separated by 102 nucleotides GFF1693 and GFF1694 are separated by 65 nucleotides
GFF1691 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 335,749 to 337,110
GFF1691
GFF1692 - Two-component system sensor histidine kinase, at 337,118 to 339,070
GFF1692
GFF1693 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 339,173 to 339,922
GFF1693
GFF1694 - Na+/H+-dicarboxylate symporter, at 339,988 to 341,337
GFF1694
Position (kb) 337
338
339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 336.191 kb on + strand, within GFF1691 at 336.192 kb on - strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.274 kb on + strand at 337.577 kb on + strand, within GFF1692 at 338.451 kb on + strand, within GFF1692 at 338.452 kb on - strand, within GFF1692 at 338.460 kb on + strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.461 kb on - strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.463 kb on + strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.464 kb on - strand, within GFF1692 at 338.496 kb on + strand, within GFF1692 at 338.497 kb on - strand, within GFF1692 at 338.535 kb on + strand, within GFF1692 at 338.535 kb on + strand, within GFF1692 at 338.536 kb on - strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.625 kb on + strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.626 kb on - strand, within GFF1692 at 338.667 kb on + strand, within GFF1692 at 338.758 kb on - strand, within GFF1692 at 338.758 kb on - strand, within GFF1692 at 338.931 kb on - strand at 338.931 kb on - strand at 338.931 kb on - strand at 339.122 kb on + strand at 339.133 kb on + strand at 339.134 kb on - strand at 339.151 kb on - strand at 339.247 kb on - strand at 339.363 kb on + strand, within GFF1693 at 339.364 kb on - strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.459 kb on + strand, within GFF1693 at 339.460 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.724 kb on - strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.816 kb on + strand, within GFF1693 at 339.817 kb on - strand, within GFF1693 at 339.834 kb on + strand, within GFF1693 at 339.835 kb on - strand, within GFF1693 at 339.947 kb on + strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand at 339.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 336,191 + GFF1691 0.32 -0.0 336,192 - GFF1691 0.33 -0.4 336,194 + GFF1691 0.33 -1.2 336,194 + GFF1691 0.33 -0.7 336,194 + GFF1691 0.33 +0.3 336,194 + GFF1691 0.33 +0.2 336,194 + GFF1691 0.33 +0.6 336,195 - GFF1691 0.33 -0.4 336,195 - GFF1691 0.33 +0.1 336,195 - GFF1691 0.33 +0.4 336,195 - GFF1691 0.33 -2.2 336,195 - GFF1691 0.33 -2.2 337,155 + -2.1 337,155 + -0.3 337,155 + +0.2 337,155 + -0.4 337,156 - -1.0 337,156 - +0.3 337,156 - -0.7 337,156 - +0.8 337,274 + -0.3 337,577 + GFF1692 0.24 +0.8 338,451 + GFF1692 0.68 -0.5 338,452 - GFF1692 0.68 -1.7 338,460 + GFF1692 0.69 +0.2 338,461 - GFF1692 0.69 -0.0 338,461 - GFF1692 0.69 -0.2 338,461 - GFF1692 0.69 -0.5 338,463 + GFF1692 0.69 -0.7 338,463 + GFF1692 0.69 +0.1 338,463 + GFF1692 0.69 +0.3 338,464 - GFF1692 0.69 -1.9 338,464 - GFF1692 0.69 +0.3 338,464 - GFF1692 0.69 +0.8 338,496 + GFF1692 0.71 -0.6 338,497 - GFF1692 0.71 -0.6 338,535 + GFF1692 0.73 -1.3 338,535 + GFF1692 0.73 +0.1 338,536 - GFF1692 0.73 -2.3 338,625 + GFF1692 0.77 +1.0 338,625 + GFF1692 0.77 -0.3 338,625 + GFF1692 0.77 +0.3 338,625 + GFF1692 0.77 +0.8 338,625 + GFF1692 0.77 -1.0 338,626 - GFF1692 0.77 -0.9 338,626 - GFF1692 0.77 +0.2 338,626 - GFF1692 0.77 -1.4 338,626 - GFF1692 0.77 -0.0 338,626 - GFF1692 0.77 -0.5 338,626 - GFF1692 0.77 -0.9 338,667 + GFF1692 0.79 -0.8 338,758 - GFF1692 0.84 -0.5 338,758 - GFF1692 0.84 -1.0 338,931 - +0.2 338,931 - -0.8 338,931 - -0.7 339,122 + +0.3 339,133 + -0.3 339,134 - -0.4 339,151 - -1.1 339,247 - -1.2 339,363 + GFF1693 0.25 -0.8 339,364 - GFF1693 0.25 -0.2 339,459 + GFF1693 0.38 +0.8 339,459 + GFF1693 0.38 -0.2 339,459 + GFF1693 0.38 -0.4 339,459 + GFF1693 0.38 +0.3 339,459 + GFF1693 0.38 -0.8 339,460 - GFF1693 0.38 -0.1 339,724 - GFF1693 0.73 +0.2 339,724 - GFF1693 0.73 +0.1 339,816 + GFF1693 0.86 -0.4 339,816 + GFF1693 0.86 +0.2 339,817 - GFF1693 0.86 -1.9 339,834 + GFF1693 0.88 -0.2 339,835 - GFF1693 0.88 +1.3 339,947 + -1.3 339,948 - -0.3 339,948 - -0.1 339,948 - -0.6 339,948 - -0.7
Or see this region's nucleotide sequence