Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1592 and GFF1593 are separated by 70 nucleotides GFF1593 and GFF1594 overlap by 4 nucleotides GFF1594 and GFF1595 are separated by 115 nucleotides
GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089
GFF1592
GFF1593 - no description, at 192,160 to 192,456
GFF1593
GFF1594 - Antitoxin DinJ (binds YafQ toxin), at 192,453 to 192,761
GFF1594
GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851
GFF1595
Position (kb) 192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 191.247 kb on + strand, within GFF1592 at 191.247 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.341 kb on - strand, within GFF1592 at 191.767 kb on - strand, within GFF1592 at 191.781 kb on + strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.982 kb on + strand at 191.982 kb on + strand at 191.982 kb on + strand at 191.983 kb on - strand at 191.983 kb on - strand at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.340 kb on + strand, within GFF1593 at 192.340 kb on + strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.409 kb on + strand, within GFF1593 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.678 kb on - strand, within GFF1594 at 192.798 kb on + strand at 192.892 kb on - strand at 192.892 kb on - strand at 192.892 kb on - strand at 192.892 kb on - strand at 193.001 kb on + strand, within GFF1595 at 193.059 kb on + strand, within GFF1595 at 193.060 kb on - strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 191,247 + GFF1592 0.62 +0.2 191,247 + GFF1592 0.62 -0.8 191,340 + GFF1592 0.67 +0.9 191,340 + GFF1592 0.67 +0.3 191,340 + GFF1592 0.67 +0.0 191,340 + GFF1592 0.67 +0.3 191,341 - GFF1592 0.67 +0.4 191,767 - GFF1592 0.86 +0.7 191,781 + GFF1592 0.86 +1.2 191,782 - GFF1592 0.86 +0.3 191,782 - GFF1592 0.86 -0.1 191,782 - GFF1592 0.86 +0.5 191,982 + +0.7 191,982 + +0.2 191,982 + +1.5 191,983 - -1.8 191,983 - +0.0 192,257 + GFF1593 0.33 -0.3 192,257 + GFF1593 0.33 -1.3 192,257 + GFF1593 0.33 -0.3 192,257 + GFF1593 0.33 -1.8 192,257 + GFF1593 0.33 -0.4 192,257 + GFF1593 0.33 -0.4 192,257 + GFF1593 0.33 +1.1 192,257 + GFF1593 0.33 +0.2 192,257 + GFF1593 0.33 -0.1 192,258 - GFF1593 0.33 -0.2 192,258 - GFF1593 0.33 -0.6 192,258 - GFF1593 0.33 -0.8 192,258 - GFF1593 0.33 -0.4 192,258 - GFF1593 0.33 -0.4 192,340 + GFF1593 0.61 -0.3 192,340 + GFF1593 0.61 -1.4 192,341 - GFF1593 0.61 -1.0 192,341 - GFF1593 0.61 -1.2 192,341 - GFF1593 0.61 +0.7 192,341 - GFF1593 0.61 -0.5 192,341 - GFF1593 0.61 -0.3 192,341 - GFF1593 0.61 +0.2 192,409 + GFF1593 0.84 -0.5 192,677 + GFF1594 0.72 -1.7 192,677 + GFF1594 0.72 +0.4 192,677 + GFF1594 0.72 -0.4 192,677 + GFF1594 0.72 -0.7 192,677 + GFF1594 0.72 -1.4 192,678 - GFF1594 0.73 -0.2 192,798 + +0.2 192,892 - +1.0 192,892 - +0.2 192,892 - +0.2 192,892 - -0.3 193,001 + GFF1595 0.13 -0.3 193,059 + GFF1595 0.19 -0.5 193,060 - GFF1595 0.19 -1.7 193,088 + GFF1595 0.22 -0.8 193,088 + GFF1595 0.22 +0.1 193,088 + GFF1595 0.22 +0.2 193,088 + GFF1595 0.22 -0.5 193,088 + GFF1595 0.22 -0.8 193,089 - GFF1595 0.22 -0.4 193,089 - GFF1595 0.22 +0.9 193,089 - GFF1595 0.22 -0.1 193,089 - GFF1595 0.22 +0.3 193,089 - GFF1595 0.22 -1.0 193,089 - GFF1595 0.22 +0.1 193,089 - GFF1595 0.22 -0.3 193,089 - GFF1595 0.22 +0.6
Or see this region's nucleotide sequence