Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1588 and GFF1589 are separated by 15 nucleotides GFF1589 and GFF1590 are separated by 34 nucleotides GFF1590 and GFF1591 are separated by 0 nucleotides GFF1591 and GFF1592 overlap by 4 nucleotides
GFF1588 - Serine phosphatase RsbU, regulator of sigma subunit, at 186,867 to 188,099
GFF1588
GFF1589 - FIG00765372: hypothetical protein, at 188,115 to 188,687
GFF1589
GFF1590 - FIG057251: Fe-S oxidoreductase, at 188,722 to 189,111
GFF1590
GFF1591 - FIG066100: Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 189,112 to 189,852
GFF1591
GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089
GFF1592
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 187.827 kb on + strand, within GFF1588 at 187.827 kb on + strand, within GFF1588 at 187.828 kb on - strand, within GFF1588 at 187.828 kb on - strand, within GFF1588 at 187.828 kb on - strand, within GFF1588 at 187.828 kb on - strand, within GFF1588 at 188.142 kb on + strand at 188.142 kb on + strand at 188.142 kb on + strand at 188.142 kb on + strand at 188.142 kb on + strand at 188.143 kb on - strand at 188.143 kb on - strand at 188.143 kb on - strand at 188.143 kb on - strand at 188.187 kb on + strand, within GFF1589 at 188.187 kb on + strand, within GFF1589 at 188.188 kb on - strand, within GFF1589 at 188.188 kb on - strand, within GFF1589 at 188.190 kb on + strand, within GFF1589 at 188.190 kb on + strand, within GFF1589 at 188.191 kb on - strand, within GFF1589 at 188.191 kb on - strand, within GFF1589 at 188.199 kb on + strand, within GFF1589 at 188.200 kb on - strand, within GFF1589 at 188.200 kb on - strand, within GFF1589 at 188.342 kb on + strand, within GFF1589 at 188.425 kb on + strand, within GFF1589 at 188.425 kb on + strand, within GFF1589 at 188.425 kb on + strand, within GFF1589 at 188.426 kb on - strand, within GFF1589 at 188.426 kb on - strand, within GFF1589 at 188.526 kb on + strand, within GFF1589 at 188.667 kb on + strand at 188.668 kb on - strand at 188.685 kb on + strand at 188.686 kb on - strand at 188.717 kb on + strand at 188.717 kb on + strand at 188.734 kb on + strand at 188.735 kb on - strand at 188.735 kb on - strand at 188.735 kb on - strand at 188.812 kb on + strand, within GFF1590 at 188.836 kb on + strand, within GFF1590 at 188.837 kb on - strand, within GFF1590 at 188.837 kb on - strand, within GFF1590 at 188.837 kb on - strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.867 kb on - strand, within GFF1590 at 188.917 kb on + strand, within GFF1590 at 189.010 kb on + strand, within GFF1590 at 189.011 kb on - strand, within GFF1590 at 189.248 kb on - strand, within GFF1591 at 189.248 kb on - strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.763 kb on + strand, within GFF1591 at 189.763 kb on + strand, within GFF1591 at 189.764 kb on - strand, within GFF1591 at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 190.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 187,827 + GFF1588 0.78 +0.8 187,827 + GFF1588 0.78 -1.4 187,828 - GFF1588 0.78 -1.4 187,828 - GFF1588 0.78 +0.3 187,828 - GFF1588 0.78 -0.5 187,828 - GFF1588 0.78 -1.4 188,142 + -1.4 188,142 + -0.4 188,142 + +0.2 188,142 + -0.0 188,142 + -0.8 188,143 - -0.3 188,143 - -1.2 188,143 - -0.9 188,143 - -0.3 188,187 + GFF1589 0.13 +1.0 188,187 + GFF1589 0.13 +0.3 188,188 - GFF1589 0.13 +0.9 188,188 - GFF1589 0.13 -0.2 188,190 + GFF1589 0.13 -0.6 188,190 + GFF1589 0.13 +0.1 188,191 - GFF1589 0.13 +3.6 188,191 - GFF1589 0.13 -0.3 188,199 + GFF1589 0.15 +0.6 188,200 - GFF1589 0.15 -0.2 188,200 - GFF1589 0.15 -0.6 188,342 + GFF1589 0.40 -0.6 188,425 + GFF1589 0.54 -0.6 188,425 + GFF1589 0.54 -0.6 188,425 + GFF1589 0.54 +0.2 188,426 - GFF1589 0.54 -0.8 188,426 - GFF1589 0.54 -0.0 188,526 + GFF1589 0.72 -1.0 188,667 + -0.7 188,668 - +0.2 188,685 + +0.5 188,686 - -0.5 188,717 + -0.1 188,717 + +0.2 188,734 + -0.2 188,735 - +0.7 188,735 - -0.4 188,735 - +0.2 188,812 + GFF1590 0.23 -0.3 188,836 + GFF1590 0.29 -0.0 188,837 - GFF1590 0.29 -1.4 188,837 - GFF1590 0.29 -0.1 188,837 - GFF1590 0.29 -0.4 188,866 + GFF1590 0.37 -1.9 188,866 + GFF1590 0.37 -0.9 188,866 + GFF1590 0.37 +1.3 188,866 + GFF1590 0.37 +0.0 188,867 - GFF1590 0.37 -0.5 188,917 + GFF1590 0.50 -0.4 189,010 + GFF1590 0.74 -1.1 189,011 - GFF1590 0.74 -1.7 189,248 - GFF1591 0.18 +0.1 189,248 - GFF1591 0.18 -2.3 189,676 + GFF1591 0.76 -1.1 189,676 + GFF1591 0.76 -2.2 189,676 + GFF1591 0.76 -0.0 189,676 + GFF1591 0.76 -1.1 189,677 - GFF1591 0.76 -0.6 189,677 - GFF1591 0.76 -0.2 189,677 - GFF1591 0.76 +0.7 189,677 - GFF1591 0.76 -0.9 189,677 - GFF1591 0.76 +0.0 189,763 + GFF1591 0.88 -0.7 189,763 + GFF1591 0.88 -0.6 189,764 - GFF1591 0.88 -0.4 189,787 + -0.4 189,787 + -0.8 189,787 + -0.6 189,787 + -1.4 189,787 + +1.2 189,787 + +0.3 189,787 + -0.8 189,787 + +0.0 189,787 + -0.0 189,788 - +0.0 189,788 - -0.4 189,788 - -0.9 189,788 - -0.2 189,788 - +0.0 189,788 - -0.9 189,788 - -0.4 189,788 - -0.9 189,788 - -0.8 190,012 - -0.5
Or see this region's nucleotide sequence