Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1546 and GFF1547 are separated by 10 nucleotides GFF1547 and GFF1548 are separated by 198 nucleotides GFF1548 and GFF1549 are separated by 13 nucleotides GFF1549 and GFF1550 are separated by 200 nucleotides
GFF1546 - Tripartite tricarboxylate transporter TctA family, at 144,912 to 146,411
GFF1546
GFF1547 - protein of unknown function DUF1468, at 146,422 to 146,808
GFF1547
GFF1548 - Tripartite tricarboxylate transporter TctA family, at 147,007 to 148,533
GFF1548
GFF1549 - Tripartite tricarboxylate transporter TctB family, at 148,547 to 148,948
GFF1549
GFF1550 - no description, at 149,149 to 149,814
GFF1550
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 146.194 kb on + strand, within GFF1546 at 146.195 kb on - strand, within GFF1546 at 146.195 kb on - strand, within GFF1546 at 146.206 kb on + strand, within GFF1546 at 146.209 kb on + strand, within GFF1546 at 146.209 kb on + strand, within GFF1546 at 146.210 kb on - strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.254 kb on + strand, within GFF1546 at 146.255 kb on - strand, within GFF1546 at 146.844 kb on + strand at 146.844 kb on + strand at 146.845 kb on - strand at 146.976 kb on - strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.985 kb on + strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.986 kb on - strand at 146.989 kb on + strand at 146.989 kb on + strand at 146.990 kb on - strand at 146.990 kb on - strand at 146.990 kb on - strand at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.212 kb on + strand, within GFF1548 at 147.213 kb on - strand, within GFF1548 at 147.213 kb on - strand, within GFF1548 at 147.288 kb on + strand, within GFF1548 at 147.288 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.290 kb on + strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.291 kb on - strand, within GFF1548 at 147.293 kb on - strand, within GFF1548 at 147.320 kb on + strand, within GFF1548 at 147.320 kb on + strand, within GFF1548 at 147.321 kb on - strand, within GFF1548 at 147.356 kb on + strand, within GFF1548 at 147.357 kb on - strand, within GFF1548 at 147.357 kb on - strand, within GFF1548 at 147.357 kb on - strand, within GFF1548 at 147.696 kb on - strand, within GFF1548 at 148.331 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.440 kb on + strand at 148.440 kb on + strand at 148.441 kb on - strand at 148.441 kb on - strand at 148.441 kb on - strand at 148.469 kb on + strand at 148.469 kb on + strand at 148.906 kb on - strand, within GFF1549 at 148.917 kb on + strand at 148.918 kb on - strand at 149.102 kb on + strand at 149.102 kb on + strand at 149.103 kb on - strand at 149.133 kb on + strand at 149.133 kb on + strand at 149.133 kb on + strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.145 kb on + strand at 149.145 kb on + strand at 149.145 kb on + strand at 149.146 kb on - strand at 149.146 kb on - strand at 149.146 kb on - strand at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.531 kb on - strand, within GFF1550
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 146,194 + GFF1546 0.85 +0.6 146,195 - GFF1546 0.86 -0.6 146,195 - GFF1546 0.86 -0.6 146,206 + GFF1546 0.86 +0.9 146,209 + GFF1546 0.86 -1.1 146,209 + GFF1546 0.86 -0.8 146,210 - GFF1546 0.87 -0.7 146,254 + GFF1546 0.89 -0.1 146,254 + GFF1546 0.89 -0.5 146,254 + GFF1546 0.89 +0.5 146,255 - GFF1546 0.90 -0.4 146,844 + -0.6 146,844 + -1.0 146,845 - -0.6 146,976 - +0.2 146,985 + -0.6 146,985 + +0.3 146,985 + -0.6 146,985 + +2.7 146,985 + -2.1 146,985 + -0.4 146,985 + +0.3 146,986 - -1.3 146,986 - -1.9 146,986 - -0.8 146,986 - -0.9 146,986 - -0.7 146,986 - +0.1 146,986 - -0.6 146,986 - -0.2 146,989 + -0.4 146,989 + -1.3 146,990 - -0.2 146,990 - -0.1 146,990 - +3.3 147,212 + GFF1548 0.13 +0.0 147,212 + GFF1548 0.13 -0.9 147,212 + GFF1548 0.13 -0.5 147,212 + GFF1548 0.13 -0.8 147,212 + GFF1548 0.13 -0.3 147,213 - GFF1548 0.13 +0.3 147,213 - GFF1548 0.13 +0.3 147,288 + GFF1548 0.18 -1.4 147,288 + GFF1548 0.18 -1.4 147,290 + GFF1548 0.19 -1.4 147,290 + GFF1548 0.19 +0.8 147,290 + GFF1548 0.19 -0.3 147,290 + GFF1548 0.19 -0.1 147,290 + GFF1548 0.19 -0.3 147,291 - GFF1548 0.19 +0.7 147,291 - GFF1548 0.19 -0.4 147,291 - GFF1548 0.19 -0.7 147,291 - GFF1548 0.19 +0.1 147,291 - GFF1548 0.19 -0.3 147,293 - GFF1548 0.19 -0.4 147,320 + GFF1548 0.20 +0.3 147,320 + GFF1548 0.20 +0.3 147,321 - GFF1548 0.21 -0.4 147,356 + GFF1548 0.23 +0.0 147,357 - GFF1548 0.23 -2.1 147,357 - GFF1548 0.23 -0.9 147,357 - GFF1548 0.23 -1.0 147,696 - GFF1548 0.45 -0.6 148,331 + GFF1548 0.87 -2.1 148,376 + GFF1548 0.90 +0.2 148,376 + GFF1548 0.90 -0.2 148,376 + GFF1548 0.90 -0.5 148,377 - GFF1548 0.90 -0.4 148,377 - GFF1548 0.90 -1.4 148,377 - GFF1548 0.90 -1.4 148,377 - GFF1548 0.90 -0.4 148,377 - GFF1548 0.90 -0.6 148,440 + -0.8 148,440 + -0.9 148,441 - -0.3 148,441 - -0.6 148,441 - +0.2 148,469 + +0.2 148,469 + -2.9 148,906 - GFF1549 0.89 +1.1 148,917 + +1.7 148,918 - -0.6 149,102 + -0.3 149,102 + -1.1 149,103 - -1.5 149,133 + -0.1 149,133 + -0.6 149,133 + -0.2 149,134 - +0.1 149,134 - -0.1 149,134 - +0.1 149,134 - -2.0 149,137 + -0.4 149,137 + +0.7 149,137 + +0.2 149,137 + +1.1 149,138 - -0.4 149,138 - -0.9 149,138 - -1.1 149,138 - +0.8 149,138 - +0.4 149,138 - +1.3 149,145 + -0.6 149,145 + -0.3 149,145 + -0.2 149,146 - -0.9 149,146 - -0.7 149,146 - +0.3 149,530 + GFF1550 0.57 -0.3 149,530 + GFF1550 0.57 -1.0 149,530 + GFF1550 0.57 +1.0 149,530 + GFF1550 0.57 -0.5 149,530 + GFF1550 0.57 -0.3 149,531 - GFF1550 0.57 -0.4
Or see this region's nucleotide sequence