Strain Fitness in Variovorax sp. SCN45 around GFF1506

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1505 and GFF1506 are separated by 10 nucleotidesGFF1506 and GFF1507 are separated by 34 nucleotides GFF1505 - Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2), at 96,447 to 97,766 GFF1505 GFF1506 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 97,777 to 99,342 GFF1506 GFF1507 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 99,377 to 101,443 GFF1507 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -1 0 1at 96.946 kb on - strand, within GFF1505at 97.021 kb on + strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.190 kb on - strand, within GFF1505at 97.216 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.340 kb on - strand, within GFF1505at 97.561 kb on + strand, within GFF1505at 97.809 kb on + strandat 97.869 kb on - strandat 97.874 kb on + strandat 97.875 kb on - strandat 97.875 kb on - strandat 98.000 kb on + strand, within GFF1506at 98.000 kb on + strand, within GFF1506at 98.069 kb on + strand, within GFF1506at 98.117 kb on + strand, within GFF1506at 98.118 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.351 kb on + strand, within GFF1506at 98.352 kb on - strand, within GFF1506at 98.352 kb on - strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.702 kb on + strand, within GFF1506at 98.735 kb on + strand, within GFF1506at 98.736 kb on - strand, within GFF1506at 98.780 kb on + strand, within GFF1506at 98.780 kb on + strand, within GFF1506at 98.781 kb on - strand, within GFF1506at 98.795 kb on + strand, within GFF1506at 98.795 kb on + strand, within GFF1506at 98.796 kb on - strand, within GFF1506at 98.831 kb on + strand, within GFF1506at 98.831 kb on + strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.832 kb on - strand, within GFF1506at 98.876 kb on + strand, within GFF1506at 98.876 kb on + strand, within GFF1506at 98.877 kb on - strand, within GFF1506at 98.987 kb on + strand, within GFF1506at 98.988 kb on - strand, within GFF1506at 98.988 kb on - strand, within GFF1506at 99.391 kb on - strandat 99.391 kb on - strandat 99.391 kb on - strandat 99.597 kb on + strand, within GFF1507at 99.598 kb on - strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.660 kb on + strand, within GFF1507at 99.661 kb on - strand, within GFF1507at 99.661 kb on - strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.723 kb on + strand, within GFF1507at 99.724 kb on - strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.948 kb on + strand, within GFF1507at 99.949 kb on - strand, within GFF1507at 99.949 kb on - strand, within GFF1507at 100.042 kb on - strand, within GFF1507at 100.042 kb on - strand, within GFF1507

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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96,946 - GFF1505 0.38 +0.3
97,021 + GFF1505 0.43 -0.3
97,022 - GFF1505 0.44 +0.2
97,022 - GFF1505 0.44 +0.7
97,022 - GFF1505 0.44 -0.4
97,189 + GFF1505 0.56 +1.4
97,189 + GFF1505 0.56 +0.2
97,190 - GFF1505 0.56 -0.6
97,216 + GFF1505 0.58 +1.1
97,252 + GFF1505 0.61 +1.4
97,252 + GFF1505 0.61 -0.2
97,252 + GFF1505 0.61 +0.8
97,252 + GFF1505 0.61 -0.3
97,253 - GFF1505 0.61 -0.3
97,253 - GFF1505 0.61 -0.4
97,253 - GFF1505 0.61 -0.3
97,339 + GFF1505 0.68 -0.2
97,339 + GFF1505 0.68 -0.3
97,339 + GFF1505 0.68 -0.9
97,339 + GFF1505 0.68 +1.5
97,340 - GFF1505 0.68 +0.1
97,561 + GFF1505 0.84 -1.1
97,809 + -1.3
97,869 - +0.3
97,874 + -0.4
97,875 - -0.0
97,875 - -0.3
98,000 + GFF1506 0.14 -0.4
98,000 + GFF1506 0.14 +0.3
98,069 + GFF1506 0.19 +0.4
98,117 + GFF1506 0.22 -0.5
98,118 - GFF1506 0.22 +0.1
98,325 - GFF1506 0.35 +0.4
98,325 - GFF1506 0.35 +0.4
98,325 - GFF1506 0.35 +0.6
98,351 + GFF1506 0.37 -0.3
98,352 - GFF1506 0.37 -0.6
98,352 - GFF1506 0.37 +0.2
98,579 + GFF1506 0.51 +0.1
98,579 + GFF1506 0.51 -1.0
98,579 + GFF1506 0.51 -1.5
98,580 - GFF1506 0.51 +0.6
98,580 - GFF1506 0.51 -0.8
98,580 - GFF1506 0.51 +0.8
98,702 + GFF1506 0.59 +0.2
98,735 + GFF1506 0.61 -0.2
98,736 - GFF1506 0.61 +0.4
98,780 + GFF1506 0.64 +0.3
98,780 + GFF1506 0.64 +0.6
98,781 - GFF1506 0.64 -0.1
98,795 + GFF1506 0.65 -1.1
98,795 + GFF1506 0.65 +0.4
98,796 - GFF1506 0.65 -0.3
98,831 + GFF1506 0.67 -1.6
98,831 + GFF1506 0.67 +0.1
98,832 - GFF1506 0.67 +0.1
98,832 - GFF1506 0.67 -0.8
98,832 - GFF1506 0.67 +0.6
98,876 + GFF1506 0.70 -0.1
98,876 + GFF1506 0.70 -0.3
98,877 - GFF1506 0.70 +0.1
98,987 + GFF1506 0.77 +0.4
98,988 - GFF1506 0.77 +0.2
98,988 - GFF1506 0.77 -0.3
99,391 - +1.7
99,391 - -0.3
99,391 - -0.6
99,597 + GFF1507 0.11 -1.0
99,598 - GFF1507 0.11 -0.1
99,660 + GFF1507 0.14 -0.4
99,660 + GFF1507 0.14 +0.0
99,660 + GFF1507 0.14 +0.3
99,661 - GFF1507 0.14 +0.1
99,661 - GFF1507 0.14 -0.4
99,723 + GFF1507 0.17 +0.3
99,723 + GFF1507 0.17 -1.1
99,723 + GFF1507 0.17 -1.3
99,724 - GFF1507 0.17 -0.4
99,948 + GFF1507 0.28 +0.3
99,948 + GFF1507 0.28 +0.1
99,948 + GFF1507 0.28 -0.1
99,949 - GFF1507 0.28 -0.7
99,949 - GFF1507 0.28 -0.6
100,042 - GFF1507 0.32 -0.7
100,042 - GFF1507 0.32 -0.2

Or see this region's nucleotide sequence