Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1481 and GFF1482 overlap by 4 nucleotides GFF1482 and GFF1483 overlap by 13 nucleotides GFF1483 and GFF1484 are separated by 101 nucleotides
GFF1481 - L-carnitine dehydratase/bile acid-inducible protein F, at 73,630 to 74,874
GFF1481
GFF1482 - Enoyl-CoA hydratase (EC 4.2.1.17), at 74,871 to 75,632
GFF1482
GFF1483 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 75,620 to 76,423
GFF1483
GFF1484 - Transcriptional regulator, LysR family, at 76,525 to 77,406
GFF1484
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1 at 73.984 kb on + strand, within GFF1481 at 73.984 kb on + strand, within GFF1481 at 73.984 kb on + strand, within GFF1481 at 73.985 kb on - strand, within GFF1481 at 73.985 kb on - strand, within GFF1481 at 73.985 kb on - strand, within GFF1481 at 74.020 kb on + strand, within GFF1481 at 75.273 kb on + strand, within GFF1482 at 75.273 kb on + strand, within GFF1482 at 75.273 kb on + strand, within GFF1482 at 75.276 kb on + strand, within GFF1482 at 75.436 kb on - strand, within GFF1482 at 75.472 kb on + strand, within GFF1482 at 75.472 kb on + strand, within GFF1482 at 75.472 kb on + strand, within GFF1482 at 75.512 kb on + strand, within GFF1482 at 75.543 kb on + strand, within GFF1482 at 75.740 kb on - strand, within GFF1483 at 75.976 kb on - strand, within GFF1483 at 76.405 kb on + strand at 76.485 kb on - strand at 76.505 kb on + strand at 76.506 kb on - strand at 76.513 kb on + strand at 76.513 kb on + strand at 76.514 kb on - strand at 76.514 kb on - strand at 76.516 kb on + strand at 76.532 kb on + strand at 76.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 73,984 + GFF1481 0.28 -1.3 73,984 + GFF1481 0.28 -0.8 73,984 + GFF1481 0.28 +0.1 73,985 - GFF1481 0.29 -0.8 73,985 - GFF1481 0.29 -1.0 73,985 - GFF1481 0.29 -0.6 74,020 + GFF1481 0.31 -0.5 75,273 + GFF1482 0.53 +0.7 75,273 + GFF1482 0.53 -0.9 75,273 + GFF1482 0.53 +0.6 75,276 + GFF1482 0.53 +0.5 75,436 - GFF1482 0.74 +0.0 75,472 + GFF1482 0.79 -0.7 75,472 + GFF1482 0.79 -0.6 75,472 + GFF1482 0.79 -1.9 75,512 + GFF1482 0.84 +0.2 75,543 + GFF1482 0.88 -1.4 75,740 - GFF1483 0.15 -0.1 75,976 - GFF1483 0.44 +1.1 76,405 + +0.2 76,485 - -0.1 76,505 + -0.2 76,506 - -0.3 76,513 + -0.1 76,513 + +1.4 76,514 - -1.4 76,514 - +0.6 76,516 + -0.2 76,532 + -0.5 76,533 - +0.6
Or see this region's nucleotide sequence