Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1414 and GFF1415 are separated by 236 nucleotides GFF1415 and GFF1416 are separated by 196 nucleotides GFF1416 and GFF1417 overlap by 16 nucleotides
GFF1414 - Circadian clock protein KaiC, at 4,206 to 5,708
GFF1414
GFF1415 - Lactoylglutathione lyase and related lyases, at 5,945 to 6,313
GFF1415
GFF1416 - no description, at 6,510 to 6,923
GFF1416
GFF1417 - no description, at 6,908 to 7,165
GFF1417
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.515 kb on + strand, within GFF1414 at 5.515 kb on + strand, within GFF1414 at 5.515 kb on + strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.516 kb on - strand, within GFF1414 at 5.655 kb on + strand at 5.656 kb on - strand at 5.656 kb on - strand at 5.656 kb on - strand at 5.734 kb on - strand at 5.744 kb on + strand at 5.744 kb on + strand at 5.749 kb on + strand at 5.796 kb on + strand at 5.796 kb on + strand at 5.796 kb on + strand at 5.797 kb on - strand at 6.077 kb on - strand, within GFF1415 at 6.096 kb on - strand, within GFF1415 at 6.230 kb on + strand, within GFF1415 at 6.231 kb on - strand, within GFF1415 at 6.242 kb on + strand, within GFF1415 at 6.243 kb on - strand, within GFF1415 at 6.243 kb on - strand, within GFF1415 at 6.246 kb on - strand, within GFF1415 at 6.246 kb on - strand, within GFF1415 at 6.291 kb on + strand at 6.291 kb on + strand at 6.292 kb on - strand at 6.292 kb on - strand at 6.606 kb on + strand, within GFF1416 at 6.606 kb on + strand, within GFF1416 at 6.607 kb on - strand, within GFF1416 at 7.216 kb on + strand at 7.216 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 5,515 + GFF1414 0.87 -2.4 5,515 + GFF1414 0.87 +1.4 5,515 + GFF1414 0.87 -0.3 5,516 - GFF1414 0.87 +0.2 5,516 - GFF1414 0.87 +0.4 5,516 - GFF1414 0.87 -0.3 5,655 + +0.4 5,656 - -0.2 5,656 - -0.3 5,656 - -0.4 5,734 - +0.5 5,744 + -0.5 5,744 + +0.1 5,749 + -0.5 5,796 + -0.4 5,796 + -0.4 5,796 + +2.3 5,797 - +0.7 6,077 - GFF1415 0.36 +2.7 6,096 - GFF1415 0.41 -1.1 6,230 + GFF1415 0.77 -0.4 6,231 - GFF1415 0.78 +1.0 6,242 + GFF1415 0.80 +0.0 6,243 - GFF1415 0.81 +1.4 6,243 - GFF1415 0.81 +0.5 6,246 - GFF1415 0.82 +0.7 6,246 - GFF1415 0.82 -0.7 6,291 + +0.4 6,291 + +1.2 6,292 - -0.2 6,292 - +0.3 6,606 + GFF1416 0.23 -0.1 6,606 + GFF1416 0.23 +0.1 6,607 - GFF1416 0.23 +0.5 7,216 + +0.3 7,216 + -0.2
Or see this region's nucleotide sequence