Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1301 and GFF1302 are separated by 3 nucleotides GFF1302 and GFF1303 are separated by 150 nucleotides GFF1303 and GFF1304 are separated by 133 nucleotides
GFF1301 - Peptide deformylase (EC 3.5.1.88), at 632,522 to 633,061
GFF1301
GFF1302 - DoxX family protein, at 633,065 to 633,460
GFF1302
GFF1303 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 633,611 to 634,648
GFF1303
GFF1304 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 634,782 to 635,789
GFF1304
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2 at 632.679 kb on + strand, within GFF1301 at 632.679 kb on + strand, within GFF1301 at 632.680 kb on - strand, within GFF1301 at 632.680 kb on - strand, within GFF1301 at 632.680 kb on - strand, within GFF1301 at 632.680 kb on - strand, within GFF1301 at 632.876 kb on + strand, within GFF1301 at 632.877 kb on - strand, within GFF1301 at 632.877 kb on - strand, within GFF1301 at 632.877 kb on - strand, within GFF1301 at 632.879 kb on - strand, within GFF1301 at 632.894 kb on + strand, within GFF1301 at 632.894 kb on + strand, within GFF1301 at 632.978 kb on + strand, within GFF1301 at 632.979 kb on - strand, within GFF1301 at 633.014 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.066 kb on + strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.067 kb on - strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.072 kb on + strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.073 kb on - strand at 633.258 kb on + strand, within GFF1302 at 633.258 kb on + strand, within GFF1302 at 633.258 kb on + strand, within GFF1302 at 633.258 kb on + strand, within GFF1302 at 633.259 kb on - strand, within GFF1302 at 633.259 kb on - strand, within GFF1302 at 633.259 kb on - strand, within GFF1302 at 633.259 kb on - strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.303 kb on + strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.304 kb on - strand, within GFF1302 at 633.312 kb on + strand, within GFF1302 at 633.313 kb on - strand, within GFF1302 at 633.313 kb on - strand, within GFF1302 at 633.313 kb on - strand, within GFF1302 at 633.466 kb on + strand at 633.467 kb on - strand at 633.467 kb on - strand at 633.467 kb on - strand at 633.467 kb on - strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.497 kb on - strand at 633.497 kb on - strand at 633.501 kb on + strand at 633.501 kb on + strand at 633.502 kb on - strand at 633.502 kb on - strand at 633.502 kb on - strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.529 kb on + strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.530 kb on - strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.533 kb on + strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.534 kb on - strand at 633.575 kb on + strand at 633.575 kb on + strand at 633.575 kb on + strand at 633.575 kb on + strand at 633.575 kb on + strand at 633.575 kb on + strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.576 kb on - strand at 633.591 kb on + strand at 633.591 kb on + strand at 633.592 kb on - strand at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.989 kb on + strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.990 kb on - strand, within GFF1303 at 633.992 kb on + strand, within GFF1303 at 633.993 kb on - strand, within GFF1303 at 633.993 kb on - strand, within GFF1303 at 633.993 kb on - strand, within GFF1303 at 633.993 kb on - strand, within GFF1303 at 634.109 kb on + strand, within GFF1303 at 634.110 kb on - strand, within GFF1303 at 634.110 kb on - strand, within GFF1303 at 634.110 kb on - strand, within GFF1303 at 634.265 kb on + strand, within GFF1303 at 634.266 kb on - strand, within GFF1303 at 634.266 kb on - strand, within GFF1303 at 634.266 kb on - strand, within GFF1303 at 634.266 kb on - strand, within GFF1303 at 634.266 kb on - strand, within GFF1303 at 634.535 kb on + strand, within GFF1303 at 634.535 kb on + strand, within GFF1303 at 634.535 kb on + strand, within GFF1303 at 634.535 kb on + strand, within GFF1303 at 634.536 kb on - strand, within GFF1303 at 634.536 kb on - strand, within GFF1303 at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.628 kb on + strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 634.629 kb on - strand at 635.145 kb on + strand, within GFF1304 at 635.145 kb on + strand, within GFF1304 at 635.145 kb on + strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.146 kb on - strand, within GFF1304 at 635.321 kb on + strand, within GFF1304 at 635.321 kb on + strand, within GFF1304 at 635.322 kb on - strand, within GFF1304 at 635.322 kb on - strand, within GFF1304 at 635.349 kb on - strand, within GFF1304 at 635.349 kb on - strand, within GFF1304 at 635.388 kb on + strand, within GFF1304 at 635.388 kb on + strand, within GFF1304 at 635.388 kb on + strand, within GFF1304 at 635.388 kb on + strand, within GFF1304 at 635.389 kb on - strand, within GFF1304 at 635.389 kb on - strand, within GFF1304 at 635.389 kb on - strand, within GFF1304 at 635.389 kb on - strand, within GFF1304 at 635.389 kb on - strand, within GFF1304 at 635.416 kb on + strand, within GFF1304 at 635.419 kb on - strand, within GFF1304 at 635.419 kb on - strand, within GFF1304
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 632,679 + GFF1301 0.29 +0.2 632,679 + GFF1301 0.29 -0.5 632,680 - GFF1301 0.29 -0.4 632,680 - GFF1301 0.29 +0.3 632,680 - GFF1301 0.29 -0.8 632,680 - GFF1301 0.29 -0.1 632,876 + GFF1301 0.66 +0.3 632,877 - GFF1301 0.66 +0.7 632,877 - GFF1301 0.66 -0.3 632,877 - GFF1301 0.66 -0.5 632,879 - GFF1301 0.66 +1.1 632,894 + GFF1301 0.69 -0.3 632,894 + GFF1301 0.69 +0.5 632,978 + GFF1301 0.84 -0.2 632,979 - GFF1301 0.85 -0.4 633,014 + -0.4 633,066 + -0.8 633,066 + -0.6 633,066 + -1.0 633,066 + +0.6 633,066 + -0.0 633,066 + -0.5 633,066 + +0.7 633,066 + +0.3 633,066 + -1.6 633,066 + +0.5 633,066 + -0.1 633,067 - -1.0 633,067 - +0.6 633,067 - +1.8 633,067 - -0.3 633,067 - -0.4 633,067 - -0.2 633,067 - -0.5 633,067 - +0.2 633,067 - -0.3 633,067 - -0.8 633,072 + -0.2 633,072 + +1.4 633,072 + +0.1 633,072 + -0.5 633,072 + -0.3 633,072 + -0.5 633,072 + -1.1 633,072 + +1.3 633,072 + +0.3 633,072 + -0.0 633,072 + +1.0 633,072 + +0.2 633,072 + -0.8 633,073 - -1.0 633,073 - -0.4 633,073 - -0.5 633,073 - -0.2 633,073 - -0.4 633,073 - +0.4 633,073 - -0.6 633,073 - +1.0 633,073 - +0.1 633,073 - +0.2 633,073 - -1.0 633,073 - -0.0 633,073 - -1.4 633,073 - -0.4 633,073 - -0.3 633,258 + GFF1302 0.49 -0.2 633,258 + GFF1302 0.49 -0.2 633,258 + GFF1302 0.49 -0.5 633,258 + GFF1302 0.49 -0.8 633,259 - GFF1302 0.49 -0.4 633,259 - GFF1302 0.49 -0.4 633,259 - GFF1302 0.49 -2.6 633,259 - GFF1302 0.49 -0.0 633,303 + GFF1302 0.60 -0.7 633,303 + GFF1302 0.60 +0.4 633,303 + GFF1302 0.60 -1.0 633,303 + GFF1302 0.60 -0.4 633,303 + GFF1302 0.60 -0.8 633,303 + GFF1302 0.60 +0.3 633,303 + GFF1302 0.60 -0.3 633,304 - GFF1302 0.60 -0.9 633,304 - GFF1302 0.60 -0.5 633,304 - GFF1302 0.60 -0.4 633,304 - GFF1302 0.60 +0.1 633,304 - GFF1302 0.60 -0.4 633,304 - GFF1302 0.60 +1.6 633,312 + GFF1302 0.62 -0.4 633,313 - GFF1302 0.63 -2.0 633,313 - GFF1302 0.63 -0.3 633,313 - GFF1302 0.63 -0.4 633,466 + -0.3 633,467 - -0.2 633,467 - -0.8 633,467 - -0.0 633,467 - -0.6 633,496 + -0.2 633,496 + +0.1 633,496 + -0.3 633,497 - -0.5 633,497 - -0.3 633,501 + -1.8 633,501 + -1.2 633,502 - +0.1 633,502 - -0.0 633,502 - +0.9 633,529 + -0.2 633,529 + +0.7 633,529 + -0.2 633,529 + -0.2 633,529 + -0.0 633,529 + -0.0 633,529 + -0.2 633,529 + +1.2 633,529 + -0.0 633,529 + +0.1 633,529 + +1.3 633,529 + -0.0 633,529 + -0.2 633,529 + +1.1 633,529 + -0.6 633,529 + -0.6 633,529 + -0.5 633,529 + -0.4 633,529 + -0.0 633,529 + -0.5 633,529 + -0.3 633,529 + +0.6 633,529 + +0.2 633,529 + -0.8 633,529 + -0.1 633,529 + -0.2 633,530 - -0.5 633,530 - -0.1 633,530 - -0.9 633,530 - -0.2 633,530 - -0.4 633,530 - -0.4 633,530 - -0.5 633,530 - -0.6 633,530 - +0.2 633,530 - -0.0 633,530 - +1.2 633,530 - -0.7 633,530 - -1.0 633,530 - -2.0 633,530 - +0.6 633,530 - +0.7 633,530 - -0.5 633,530 - +0.2 633,530 - -1.4 633,533 + -0.2 633,533 + -0.4 633,533 + +0.7 633,533 + +1.6 633,533 + -0.0 633,533 + +0.3 633,533 + -1.2 633,533 + +0.1 633,533 + +1.0 633,533 + -0.1 633,534 - -0.2 633,534 - -0.6 633,534 - -0.6 633,534 - +0.2 633,534 - -1.0 633,534 - -0.6 633,534 - +0.6 633,534 - -1.5 633,534 - +0.7 633,575 + +0.2 633,575 + +0.2 633,575 + -1.0 633,575 + -1.6 633,575 + -0.8 633,575 + +0.2 633,576 - +0.6 633,576 - +0.2 633,576 - -0.7 633,576 - -0.5 633,576 - -0.6 633,576 - -0.6 633,576 - -0.4 633,576 - -0.6 633,576 - +0.2 633,576 - +0.2 633,591 + +0.2 633,591 + -0.7 633,592 - +0.4 633,989 + GFF1303 0.36 -0.5 633,989 + GFF1303 0.36 -0.2 633,989 + GFF1303 0.36 +0.6 633,989 + GFF1303 0.36 -0.4 633,989 + GFF1303 0.36 -0.1 633,989 + GFF1303 0.36 -0.6 633,989 + GFF1303 0.36 -0.6 633,989 + GFF1303 0.36 +0.6 633,990 - GFF1303 0.37 -0.2 633,990 - GFF1303 0.37 +0.3 633,990 - GFF1303 0.37 -1.0 633,990 - GFF1303 0.37 -0.6 633,990 - GFF1303 0.37 +1.6 633,990 - GFF1303 0.37 +0.6 633,992 + GFF1303 0.37 -0.0 633,993 - GFF1303 0.37 -0.6 633,993 - GFF1303 0.37 -0.2 633,993 - GFF1303 0.37 +0.2 633,993 - GFF1303 0.37 -2.5 634,109 + GFF1303 0.48 -1.2 634,110 - GFF1303 0.48 -1.8 634,110 - GFF1303 0.48 -2.0 634,110 - GFF1303 0.48 -1.2 634,265 + GFF1303 0.63 -0.4 634,266 - GFF1303 0.63 +0.1 634,266 - GFF1303 0.63 -0.2 634,266 - GFF1303 0.63 -0.0 634,266 - GFF1303 0.63 +0.2 634,266 - GFF1303 0.63 -0.1 634,535 + GFF1303 0.89 -0.1 634,535 + GFF1303 0.89 -1.1 634,535 + GFF1303 0.89 -0.0 634,535 + GFF1303 0.89 -1.3 634,536 - GFF1303 0.89 -0.2 634,536 - GFF1303 0.89 +0.2 634,628 + +0.8 634,628 + +2.2 634,628 + +0.9 634,628 + -0.3 634,628 + -0.4 634,628 + -0.4 634,628 + -2.2 634,628 + -0.8 634,628 + -0.5 634,628 + -1.2 634,628 + -1.0 634,629 - -0.8 634,629 - -0.6 634,629 - -0.3 634,629 - -1.0 634,629 - +0.2 634,629 - -0.3 634,629 - -0.5 634,629 - +0.6 634,629 - -0.5 634,629 - -1.3 634,629 - +0.0 634,629 - +1.0 634,629 - +0.7 634,629 - +1.2 634,629 - -0.4 634,629 - +0.2 634,629 - -0.2 634,629 - -1.3 635,145 + GFF1304 0.36 -0.7 635,145 + GFF1304 0.36 +0.1 635,145 + GFF1304 0.36 -1.1 635,146 - GFF1304 0.36 -0.2 635,146 - GFF1304 0.36 +1.0 635,146 - GFF1304 0.36 -0.8 635,146 - GFF1304 0.36 +1.0 635,146 - GFF1304 0.36 -0.6 635,146 - GFF1304 0.36 -0.4 635,321 + GFF1304 0.53 -0.2 635,321 + GFF1304 0.53 +0.4 635,322 - GFF1304 0.54 -0.2 635,322 - GFF1304 0.54 +0.3 635,349 - GFF1304 0.56 +1.0 635,349 - GFF1304 0.56 +0.6 635,388 + GFF1304 0.60 +0.2 635,388 + GFF1304 0.60 -0.6 635,388 + GFF1304 0.60 -0.2 635,388 + GFF1304 0.60 +0.4 635,389 - GFF1304 0.60 +0.6 635,389 - GFF1304 0.60 -1.0 635,389 - GFF1304 0.60 -0.2 635,389 - GFF1304 0.60 -0.2 635,389 - GFF1304 0.60 -0.4 635,416 + GFF1304 0.63 +0.0 635,419 - GFF1304 0.63 -0.3 635,419 - GFF1304 0.63 -0.4
Or see this region's nucleotide sequence