Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1270 and GFF1271 are separated by 95 nucleotides GFF1271 and GFF1272 overlap by 38 nucleotides
GFF1270 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 586,128 to 601,286
GFF1270
GFF1271 - no description, at 601,382 to 602,296
GFF1271
GFF1272 - no description, at 602,259 to 603,113
GFF1272
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.480 kb on + strand at 600.481 kb on - strand at 600.481 kb on - strand at 600.481 kb on - strand at 600.486 kb on + strand at 600.486 kb on + strand at 600.486 kb on + strand at 600.486 kb on + strand at 600.487 kb on - strand at 600.547 kb on - strand at 600.577 kb on - strand at 600.657 kb on + strand at 600.657 kb on + strand at 600.657 kb on + strand at 600.765 kb on + strand at 600.766 kb on - strand at 600.766 kb on - strand at 600.766 kb on - strand at 600.766 kb on - strand at 600.771 kb on + strand at 600.771 kb on + strand at 600.771 kb on + strand at 600.771 kb on + strand at 600.772 kb on - strand at 600.772 kb on - strand at 600.772 kb on - strand at 600.828 kb on + strand at 600.829 kb on - strand at 600.879 kb on + strand at 600.879 kb on + strand at 600.879 kb on + strand at 600.879 kb on + strand at 600.879 kb on + strand at 600.879 kb on + strand at 600.880 kb on - strand at 600.880 kb on - strand at 600.880 kb on - strand at 600.924 kb on + strand at 600.924 kb on + strand at 600.924 kb on + strand at 600.924 kb on + strand at 600.925 kb on - strand at 600.925 kb on - strand at 600.925 kb on - strand at 600.925 kb on - strand at 600.925 kb on - strand at 600.969 kb on + strand at 600.969 kb on + strand at 600.970 kb on - strand at 600.970 kb on - strand at 600.970 kb on - strand at 600.970 kb on - strand at 601.038 kb on + strand at 601.038 kb on + strand at 601.038 kb on + strand at 601.038 kb on + strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.039 kb on - strand at 601.127 kb on + strand at 601.127 kb on + strand at 601.128 kb on - strand at 601.148 kb on + strand at 601.148 kb on + strand at 601.148 kb on + strand at 601.148 kb on + strand at 601.148 kb on + strand at 601.148 kb on + strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.149 kb on - strand at 601.161 kb on + strand at 601.162 kb on - strand at 601.162 kb on - strand at 601.285 kb on - strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.614 kb on + strand, within GFF1271 at 601.614 kb on + strand, within GFF1271 at 601.614 kb on + strand, within GFF1271 at 601.614 kb on + strand, within GFF1271 at 601.614 kb on + strand, within GFF1271 at 601.615 kb on - strand, within GFF1271 at 601.615 kb on - strand, within GFF1271 at 601.615 kb on - strand, within GFF1271 at 601.615 kb on - strand, within GFF1271 at 601.615 kb on - strand, within GFF1271 at 601.768 kb on + strand, within GFF1271 at 601.768 kb on + strand, within GFF1271 at 601.768 kb on + strand, within GFF1271 at 601.769 kb on - strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.872 kb on + strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.873 kb on - strand, within GFF1271 at 601.921 kb on + strand, within GFF1271 at 601.922 kb on - strand, within GFF1271 at 601.922 kb on - strand, within GFF1271 at 601.922 kb on - strand, within GFF1271 at 601.922 kb on - strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.939 kb on + strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.940 kb on - strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.958 kb on + strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 601.959 kb on - strand, within GFF1271 at 602.027 kb on - strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.086 kb on + strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.087 kb on - strand, within GFF1271 at 602.149 kb on + strand, within GFF1271 at 602.149 kb on + strand, within GFF1271 at 602.149 kb on + strand, within GFF1271 at 602.149 kb on + strand, within GFF1271 at 602.149 kb on + strand, within GFF1271 at 602.150 kb on - strand, within GFF1271 at 602.150 kb on - strand, within GFF1271 at 602.150 kb on - strand, within GFF1271 at 602.150 kb on - strand, within GFF1271 at 602.161 kb on + strand, within GFF1271 at 602.199 kb on + strand, within GFF1271 at 602.199 kb on + strand, within GFF1271 at 602.199 kb on + strand, within GFF1271 at 602.200 kb on - strand, within GFF1271 at 602.200 kb on - strand, within GFF1271 at 602.200 kb on - strand, within GFF1271 at 602.200 kb on - strand, within GFF1271 at 602.203 kb on + strand, within GFF1271 at 602.324 kb on + strand at 602.339 kb on + strand at 602.340 kb on - strand at 602.429 kb on - strand, within GFF1272 at 602.429 kb on - strand, within GFF1272 at 602.429 kb on - strand, within GFF1272 at 602.456 kb on + strand, within GFF1272 at 602.573 kb on - strand, within GFF1272 at 602.585 kb on - strand, within GFF1272 at 602.604 kb on - strand, within GFF1272 at 602.607 kb on + strand, within GFF1272 at 602.662 kb on - strand, within GFF1272 at 602.662 kb on - strand, within GFF1272 at 602.716 kb on - strand, within GFF1272 at 602.798 kb on + strand, within GFF1272 at 602.882 kb on - strand, within GFF1272 at 602.923 kb on - strand, within GFF1272 at 602.934 kb on + strand, within GFF1272 at 602.935 kb on - strand, within GFF1272 at 602.936 kb on + strand, within GFF1272 at 602.936 kb on + strand, within GFF1272 at 602.960 kb on + strand, within GFF1272 at 602.961 kb on - strand, within GFF1272 at 603.009 kb on - strand, within GFF1272 at 603.037 kb on + strand at 603.038 kb on - strand at 603.040 kb on + strand at 603.043 kb on + strand at 603.184 kb on - strand at 603.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 600,480 + -0.2 600,480 + -0.1 600,480 + -0.2 600,480 + +0.5 600,480 + +0.6 600,480 + -0.6 600,480 + -0.1 600,480 + -1.2 600,480 + -0.1 600,480 + +0.2 600,481 - -0.2 600,481 - +1.2 600,481 - -0.8 600,486 + -1.4 600,486 + +0.8 600,486 + -0.0 600,486 + -0.5 600,487 - -1.2 600,547 - +1.2 600,577 - -0.3 600,657 + -0.2 600,657 + +1.0 600,657 + -0.2 600,765 + +0.8 600,766 - -1.6 600,766 - -0.4 600,766 - -0.0 600,766 - +0.3 600,771 + +0.5 600,771 + -0.4 600,771 + -0.0 600,771 + +1.0 600,772 - -0.5 600,772 - -0.0 600,772 - +0.0 600,828 + -0.5 600,829 - +1.0 600,879 + -0.7 600,879 + -0.9 600,879 + -0.3 600,879 + -2.7 600,879 + -0.3 600,879 + -0.6 600,880 - -0.4 600,880 - +0.2 600,880 - -0.6 600,924 + +0.2 600,924 + +0.2 600,924 + -0.4 600,924 + -0.3 600,925 - +0.4 600,925 - -1.0 600,925 - +0.4 600,925 - +0.8 600,925 - -0.4 600,969 + -0.0 600,969 + -0.3 600,970 - -0.4 600,970 - -0.3 600,970 - -1.8 600,970 - -0.0 601,038 + +0.3 601,038 + +0.2 601,038 + -0.3 601,038 + -0.6 601,039 - -1.2 601,039 - -0.5 601,039 - -0.8 601,039 - -0.0 601,039 - -0.4 601,039 - -0.3 601,039 - -1.0 601,039 - -0.2 601,039 - -0.6 601,127 + -0.9 601,127 + +0.1 601,128 - +0.0 601,148 + -0.1 601,148 + -0.1 601,148 + -0.3 601,148 + -0.5 601,148 + -0.3 601,148 + -0.1 601,149 - -1.5 601,149 - -0.9 601,149 - -0.3 601,149 - -0.8 601,149 - -0.4 601,149 - +0.6 601,149 - +0.2 601,161 + -0.6 601,162 - -0.5 601,162 - +2.2 601,285 - -0.0 601,323 + -0.2 601,323 + -0.1 601,323 + -0.2 601,323 + +0.2 601,323 + -0.8 601,324 - -0.4 601,324 - -0.9 601,324 - -0.3 601,324 - +1.2 601,324 - -2.0 601,324 - -0.8 601,324 - -0.4 601,324 - -0.1 601,324 - -1.2 601,324 - -0.5 601,324 - -0.9 601,614 + GFF1271 0.25 -0.6 601,614 + GFF1271 0.25 -0.3 601,614 + GFF1271 0.25 +0.2 601,614 + GFF1271 0.25 -0.9 601,614 + GFF1271 0.25 +0.1 601,615 - GFF1271 0.25 -1.2 601,615 - GFF1271 0.25 +0.2 601,615 - GFF1271 0.25 +0.3 601,615 - GFF1271 0.25 +0.6 601,615 - GFF1271 0.25 -0.5 601,768 + GFF1271 0.42 +0.3 601,768 + GFF1271 0.42 +0.4 601,768 + GFF1271 0.42 -0.4 601,769 - GFF1271 0.42 -0.9 601,872 + GFF1271 0.54 -1.7 601,872 + GFF1271 0.54 +0.2 601,872 + GFF1271 0.54 +0.6 601,872 + GFF1271 0.54 -0.6 601,872 + GFF1271 0.54 +0.6 601,872 + GFF1271 0.54 +0.4 601,872 + GFF1271 0.54 -1.2 601,872 + GFF1271 0.54 -0.3 601,873 - GFF1271 0.54 +0.7 601,873 - GFF1271 0.54 -0.3 601,873 - GFF1271 0.54 -0.4 601,873 - GFF1271 0.54 -0.5 601,873 - GFF1271 0.54 +0.8 601,873 - GFF1271 0.54 -0.3 601,873 - GFF1271 0.54 -2.0 601,873 - GFF1271 0.54 -0.2 601,921 + GFF1271 0.59 -0.4 601,922 - GFF1271 0.59 -0.6 601,922 - GFF1271 0.59 -0.9 601,922 - GFF1271 0.59 +0.2 601,922 - GFF1271 0.59 +0.6 601,939 + GFF1271 0.61 -0.1 601,939 + GFF1271 0.61 +0.0 601,939 + GFF1271 0.61 -0.2 601,939 + GFF1271 0.61 +0.5 601,939 + GFF1271 0.61 -0.0 601,939 + GFF1271 0.61 -1.6 601,939 + GFF1271 0.61 +0.4 601,939 + GFF1271 0.61 -0.1 601,940 - GFF1271 0.61 -0.4 601,940 - GFF1271 0.61 +0.2 601,940 - GFF1271 0.61 -0.8 601,940 - GFF1271 0.61 +0.6 601,940 - GFF1271 0.61 -2.4 601,940 - GFF1271 0.61 +1.2 601,940 - GFF1271 0.61 -0.6 601,940 - GFF1271 0.61 -1.1 601,940 - GFF1271 0.61 +0.7 601,958 + GFF1271 0.63 -0.0 601,958 + GFF1271 0.63 +0.0 601,958 + GFF1271 0.63 -0.4 601,958 + GFF1271 0.63 +0.4 601,958 + GFF1271 0.63 -0.6 601,958 + GFF1271 0.63 +0.2 601,958 + GFF1271 0.63 -0.3 601,958 + GFF1271 0.63 -0.0 601,958 + GFF1271 0.63 -1.4 601,958 + GFF1271 0.63 -0.2 601,958 + GFF1271 0.63 -0.2 601,958 + GFF1271 0.63 -0.8 601,958 + GFF1271 0.63 -0.9 601,959 - GFF1271 0.63 -0.5 601,959 - GFF1271 0.63 +0.3 601,959 - GFF1271 0.63 -0.3 601,959 - GFF1271 0.63 +0.1 601,959 - GFF1271 0.63 -0.0 601,959 - GFF1271 0.63 -0.9 601,959 - GFF1271 0.63 +1.3 601,959 - GFF1271 0.63 -0.8 601,959 - GFF1271 0.63 -0.4 601,959 - GFF1271 0.63 -0.5 601,959 - GFF1271 0.63 -0.1 601,959 - GFF1271 0.63 +0.8 601,959 - GFF1271 0.63 -0.4 601,959 - GFF1271 0.63 -1.1 601,959 - GFF1271 0.63 +0.4 601,959 - GFF1271 0.63 -0.9 601,959 - GFF1271 0.63 -0.0 601,959 - GFF1271 0.63 -0.5 601,959 - GFF1271 0.63 +0.2 601,959 - GFF1271 0.63 -0.8 601,959 - GFF1271 0.63 -0.8 602,027 - GFF1271 0.70 -0.6 602,086 + GFF1271 0.77 +0.6 602,086 + GFF1271 0.77 +0.2 602,086 + GFF1271 0.77 -0.6 602,086 + GFF1271 0.77 -0.2 602,086 + GFF1271 0.77 -0.3 602,086 + GFF1271 0.77 +0.8 602,087 - GFF1271 0.77 -0.7 602,087 - GFF1271 0.77 -0.5 602,087 - GFF1271 0.77 -0.3 602,087 - GFF1271 0.77 -0.8 602,087 - GFF1271 0.77 -0.8 602,087 - GFF1271 0.77 -0.8 602,087 - GFF1271 0.77 -0.3 602,149 + GFF1271 0.84 -0.6 602,149 + GFF1271 0.84 +0.9 602,149 + GFF1271 0.84 +1.0 602,149 + GFF1271 0.84 -0.7 602,149 + GFF1271 0.84 -0.2 602,150 - GFF1271 0.84 +0.4 602,150 - GFF1271 0.84 -0.8 602,150 - GFF1271 0.84 -0.6 602,150 - GFF1271 0.84 -0.4 602,161 + GFF1271 0.85 +0.3 602,199 + GFF1271 0.89 -0.3 602,199 + GFF1271 0.89 +0.6 602,199 + GFF1271 0.89 -0.6 602,200 - GFF1271 0.89 +0.8 602,200 - GFF1271 0.89 -0.2 602,200 - GFF1271 0.89 +0.6 602,200 - GFF1271 0.89 -1.0 602,203 + GFF1271 0.90 -1.2 602,324 + -0.0 602,339 + +0.1 602,340 - +0.5 602,429 - GFF1272 0.20 -0.4 602,429 - GFF1272 0.20 -0.3 602,429 - GFF1272 0.20 -0.8 602,456 + GFF1272 0.23 -0.3 602,573 - GFF1272 0.37 -1.0 602,585 - GFF1272 0.38 +0.1 602,604 - GFF1272 0.40 -0.3 602,607 + GFF1272 0.41 -0.7 602,662 - GFF1272 0.47 -0.0 602,662 - GFF1272 0.47 +0.6 602,716 - GFF1272 0.53 +1.0 602,798 + GFF1272 0.63 -1.9 602,882 - GFF1272 0.73 -1.1 602,923 - GFF1272 0.78 -0.4 602,934 + GFF1272 0.79 -1.4 602,935 - GFF1272 0.79 +0.1 602,936 + GFF1272 0.79 +0.1 602,936 + GFF1272 0.79 +0.4 602,960 + GFF1272 0.82 -0.6 602,961 - GFF1272 0.82 -0.0 603,009 - GFF1272 0.88 -1.6 603,037 + -0.3 603,038 - +0.8 603,040 + -0.3 603,043 + -0.5 603,184 - -1.9 603,186 - -0.7
Or see this region's nucleotide sequence