Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1267 and GFF1268 are separated by 117 nucleotides GFF1268 and GFF1269 overlap by 4 nucleotides GFF1269 and GFF1270 are separated by 0 nucleotides
GFF1267 - Probable lipoprotein signal peptide, at 583,258 to 584,262
GFF1267
GFF1268 - FIG022199: FAD-binding protein, at 584,380 to 585,738
GFF1268
GFF1269 - no description, at 585,735 to 586,127
GFF1269
GFF1270 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 586,128 to 601,286
GFF1270
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.782 kb on - strand, within GFF1267 at 583.997 kb on + strand, within GFF1267 at 584.298 kb on - strand at 584.298 kb on - strand at 584.340 kb on - strand at 584.355 kb on + strand at 584.356 kb on - strand at 584.804 kb on + strand, within GFF1268 at 584.804 kb on + strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.157 kb on + strand, within GFF1268 at 585.337 kb on + strand, within GFF1268 at 585.337 kb on + strand, within GFF1268 at 585.338 kb on - strand, within GFF1268 at 585.460 kb on + strand, within GFF1268 at 585.460 kb on + strand, within GFF1268 at 585.461 kb on - strand, within GFF1268 at 585.475 kb on + strand, within GFF1268 at 585.475 kb on + strand, within GFF1268 at 585.508 kb on + strand, within GFF1268 at 585.514 kb on + strand, within GFF1268 at 585.515 kb on - strand, within GFF1268 at 585.574 kb on + strand, within GFF1268 at 585.574 kb on + strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.622 kb on + strand at 585.622 kb on + strand at 585.622 kb on + strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.626 kb on - strand at 585.720 kb on + strand at 585.720 kb on + strand at 585.720 kb on + strand at 585.721 kb on - strand at 585.747 kb on - strand at 585.824 kb on + strand, within GFF1269 at 585.824 kb on + strand, within GFF1269 at 585.867 kb on + strand, within GFF1269 at 585.867 kb on + strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.894 kb on + strand, within GFF1269 at 585.895 kb on - strand, within GFF1269 at 585.895 kb on - strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.912 kb on - strand, within GFF1269 at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.332 kb on + strand at 586.332 kb on + strand at 586.332 kb on + strand at 586.333 kb on - strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.477 kb on - strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.545 kb on + strand at 586.545 kb on + strand at 586.567 kb on - strand at 586.567 kb on - strand at 586.567 kb on - strand at 586.642 kb on + strand at 586.643 kb on - strand at 586.668 kb on + strand at 586.668 kb on + strand at 586.669 kb on - strand at 586.669 kb on - strand at 586.674 kb on + strand at 586.674 kb on + strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.728 kb on + strand at 586.738 kb on - strand at 586.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 583,782 - GFF1267 0.52 -0.5 583,997 + GFF1267 0.74 +2.6 584,298 - -1.0 584,298 - +0.2 584,340 - -1.6 584,355 + -0.9 584,356 - -0.1 584,804 + GFF1268 0.31 +1.1 584,804 + GFF1268 0.31 -0.2 585,116 - GFF1268 0.54 +0.5 585,116 - GFF1268 0.54 +0.1 585,116 - GFF1268 0.54 -1.2 585,118 + GFF1268 0.54 +0.1 585,118 + GFF1268 0.54 -0.6 585,118 + GFF1268 0.54 -1.3 585,157 + GFF1268 0.57 +1.6 585,337 + GFF1268 0.70 -0.8 585,337 + GFF1268 0.70 +0.3 585,338 - GFF1268 0.70 +0.6 585,460 + GFF1268 0.79 -0.1 585,460 + GFF1268 0.79 +0.3 585,461 - GFF1268 0.80 +0.4 585,475 + GFF1268 0.81 +0.3 585,475 + GFF1268 0.81 -0.7 585,508 + GFF1268 0.83 -0.3 585,514 + GFF1268 0.83 -0.3 585,515 - GFF1268 0.84 +0.5 585,574 + GFF1268 0.88 +0.0 585,574 + GFF1268 0.88 +0.5 585,575 - GFF1268 0.88 +0.3 585,575 - GFF1268 0.88 +0.1 585,575 - GFF1268 0.88 -0.8 585,622 + -0.7 585,622 + +0.3 585,622 + -0.4 585,623 - -0.7 585,623 - +0.0 585,623 - -1.0 585,623 - -0.4 585,626 - -0.1 585,720 + +0.2 585,720 + -0.9 585,720 + +2.0 585,721 - +0.2 585,747 - -0.2 585,824 + GFF1269 0.23 +0.6 585,824 + GFF1269 0.23 -0.8 585,867 + GFF1269 0.34 -0.8 585,867 + GFF1269 0.34 +2.1 585,868 - GFF1269 0.34 -0.4 585,868 - GFF1269 0.34 -0.5 585,868 - GFF1269 0.34 +0.4 585,868 - GFF1269 0.34 +1.0 585,894 + GFF1269 0.40 -0.0 585,895 - GFF1269 0.41 -0.4 585,895 - GFF1269 0.41 -1.2 585,911 + GFF1269 0.45 -1.0 585,911 + GFF1269 0.45 -0.0 585,911 + GFF1269 0.45 -0.4 585,911 + GFF1269 0.45 -1.2 585,912 - GFF1269 0.45 -1.1 586,242 + +0.3 586,242 + -0.3 586,242 + +0.2 586,242 + -0.1 586,242 + -0.8 586,242 + -0.7 586,332 + -0.3 586,332 + -0.1 586,332 + -0.9 586,333 - +0.6 586,476 + +0.1 586,476 + -1.0 586,477 - -1.1 586,503 + +0.2 586,503 + -0.5 586,503 + -0.3 586,503 + -0.7 586,503 + +0.6 586,504 - -0.8 586,504 - -0.0 586,504 - +1.1 586,504 - -0.2 586,504 - +0.3 586,504 - -0.6 586,504 - +0.6 586,504 - -0.0 586,545 + -0.8 586,545 + -0.5 586,567 - -2.0 586,567 - -0.4 586,567 - -0.4 586,642 + -0.3 586,643 - +0.7 586,668 + -0.3 586,668 + -1.2 586,669 - -0.1 586,669 - -0.4 586,674 + -1.2 586,674 + -0.6 586,675 - +0.3 586,675 - -1.7 586,675 - -0.8 586,675 - +0.1 586,728 + -0.0 586,738 - -0.6 586,738 - -0.0
Or see this region's nucleotide sequence