Strain Fitness in Variovorax sp. SCN45 around GFF1244

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1243 and GFF1244 are separated by 113 nucleotidesGFF1244 and GFF1245 are separated by 22 nucleotides GFF1243 - transglutaminase, N-terminal domain protein, at 562,939 to 563,847 GFF1243 GFF1244 - Uncharacterized protein YqjZ, at 563,961 to 564,293 GFF1244 GFF1245 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 564,316 to 566,157 GFF1245 Position (kb) 563 564 565Strain fitness (log2 ratio) -2 -1 0 1at 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.985 kb on + strandat 562.986 kb on - strandat 562.986 kb on - strandat 562.986 kb on - strandat 562.986 kb on - strandat 563.004 kb on - strandat 563.126 kb on + strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.127 kb on - strand, within GFF1243at 563.210 kb on + strand, within GFF1243at 563.210 kb on + strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.211 kb on - strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.216 kb on + strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.217 kb on - strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.279 kb on + strand, within GFF1243at 563.280 kb on - strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.354 kb on + strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.355 kb on - strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.492 kb on + strand, within GFF1243at 563.493 kb on - strand, within GFF1243at 563.493 kb on - strand, within GFF1243at 563.493 kb on - strand, within GFF1243at 563.795 kb on + strandat 563.796 kb on - strandat 563.802 kb on - strandat 563.825 kb on + strandat 563.825 kb on + strandat 563.825 kb on + strandat 563.825 kb on + strandat 563.964 kb on + strandat 563.964 kb on + strandat 563.964 kb on + strandat 563.964 kb on + strandat 563.964 kb on + strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 563.965 kb on - strandat 564.060 kb on + strand, within GFF1244at 564.114 kb on + strand, within GFF1244at 564.114 kb on + strand, within GFF1244at 564.114 kb on + strand, within GFF1244at 564.114 kb on + strand, within GFF1244at 564.115 kb on - strand, within GFF1244at 564.115 kb on - strand, within GFF1244at 564.115 kb on - strand, within GFF1244at 564.115 kb on - strand, within GFF1244at 564.115 kb on - strand, within GFF1244at 564.117 kb on + strand, within GFF1244at 564.117 kb on + strand, within GFF1244at 564.117 kb on + strand, within GFF1244at 564.117 kb on + strand, within GFF1244at 564.117 kb on + strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.118 kb on - strand, within GFF1244at 564.207 kb on + strand, within GFF1244at 564.207 kb on + strand, within GFF1244at 564.207 kb on + strand, within GFF1244at 564.207 kb on + strand, within GFF1244at 564.208 kb on - strand, within GFF1244at 564.208 kb on - strand, within GFF1244at 564.208 kb on - strand, within GFF1244at 564.240 kb on + strand, within GFF1244at 564.240 kb on + strand, within GFF1244at 564.240 kb on + strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.241 kb on - strand, within GFF1244at 564.892 kb on + strand, within GFF1245at 564.892 kb on + strand, within GFF1245at 564.893 kb on - strand, within GFF1245at 564.893 kb on - strand, within GFF1245at 564.893 kb on - strand, within GFF1245at 564.893 kb on - strand, within GFF1245at 564.893 kb on - strand, within GFF1245at 564.923 kb on - strand, within GFF1245

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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562,985 + -0.3
562,985 + -0.8
562,985 + -0.6
562,985 + -0.7
562,985 + -0.2
562,985 + -0.7
562,986 - -2.0
562,986 - -0.1
562,986 - -0.0
562,986 - -1.3
563,004 - +0.4
563,126 + GFF1243 0.21 +0.1
563,127 - GFF1243 0.21 +0.2
563,127 - GFF1243 0.21 -0.3
563,127 - GFF1243 0.21 -0.8
563,127 - GFF1243 0.21 -0.4
563,127 - GFF1243 0.21 -0.7
563,210 + GFF1243 0.30 -0.7
563,210 + GFF1243 0.30 -0.0
563,211 - GFF1243 0.30 -0.3
563,211 - GFF1243 0.30 -0.7
563,211 - GFF1243 0.30 -0.5
563,211 - GFF1243 0.30 -0.1
563,211 - GFF1243 0.30 +0.4
563,211 - GFF1243 0.30 -0.4
563,211 - GFF1243 0.30 +1.3
563,216 + GFF1243 0.30 -1.0
563,216 + GFF1243 0.30 -0.6
563,216 + GFF1243 0.30 +0.2
563,216 + GFF1243 0.30 -0.0
563,216 + GFF1243 0.30 -0.3
563,216 + GFF1243 0.30 +0.6
563,217 - GFF1243 0.31 -0.2
563,217 - GFF1243 0.31 +0.6
563,217 - GFF1243 0.31 -0.1
563,279 + GFF1243 0.37 -0.7
563,279 + GFF1243 0.37 -0.0
563,279 + GFF1243 0.37 -0.3
563,280 - GFF1243 0.38 -0.2
563,354 + GFF1243 0.46 -0.0
563,354 + GFF1243 0.46 -0.4
563,354 + GFF1243 0.46 +1.0
563,354 + GFF1243 0.46 -1.1
563,355 - GFF1243 0.46 -0.1
563,355 - GFF1243 0.46 -1.0
563,355 - GFF1243 0.46 +0.6
563,355 - GFF1243 0.46 +0.5
563,355 - GFF1243 0.46 -1.1
563,492 + GFF1243 0.61 +1.3
563,492 + GFF1243 0.61 -0.2
563,492 + GFF1243 0.61 -0.0
563,493 - GFF1243 0.61 -1.2
563,493 - GFF1243 0.61 -0.0
563,493 - GFF1243 0.61 +0.3
563,795 + -0.2
563,796 - -1.0
563,802 - +0.3
563,825 + +1.2
563,825 + +1.2
563,825 + -0.4
563,825 + -0.4
563,964 + -1.3
563,964 + -0.8
563,964 + +0.2
563,964 + +0.4
563,964 + -0.4
563,965 - -0.0
563,965 - -0.8
563,965 - +0.8
563,965 - -1.3
563,965 - +1.2
563,965 - +0.0
563,965 - +0.7
563,965 - +0.3
563,965 - -0.4
563,965 - +1.0
564,060 + GFF1244 0.30 -1.6
564,114 + GFF1244 0.46 -0.0
564,114 + GFF1244 0.46 -0.9
564,114 + GFF1244 0.46 -0.3
564,114 + GFF1244 0.46 +0.2
564,115 - GFF1244 0.46 +1.3
564,115 - GFF1244 0.46 +0.3
564,115 - GFF1244 0.46 -0.4
564,115 - GFF1244 0.46 -0.0
564,115 - GFF1244 0.46 +1.6
564,117 + GFF1244 0.47 -0.8
564,117 + GFF1244 0.47 -1.9
564,117 + GFF1244 0.47 -1.6
564,117 + GFF1244 0.47 -0.2
564,117 + GFF1244 0.47 -0.5
564,118 - GFF1244 0.47 -1.6
564,118 - GFF1244 0.47 +0.3
564,118 - GFF1244 0.47 -0.8
564,118 - GFF1244 0.47 -0.5
564,118 - GFF1244 0.47 +0.1
564,118 - GFF1244 0.47 -0.6
564,118 - GFF1244 0.47 -1.9
564,207 + GFF1244 0.74 -0.3
564,207 + GFF1244 0.74 -0.1
564,207 + GFF1244 0.74 -0.7
564,207 + GFF1244 0.74 -1.2
564,208 - GFF1244 0.74 -0.0
564,208 - GFF1244 0.74 -1.8
564,208 - GFF1244 0.74 -0.5
564,240 + GFF1244 0.84 +1.0
564,240 + GFF1244 0.84 +0.2
564,240 + GFF1244 0.84 +0.3
564,241 - GFF1244 0.84 -0.8
564,241 - GFF1244 0.84 -0.3
564,241 - GFF1244 0.84 -0.3
564,241 - GFF1244 0.84 -0.3
564,241 - GFF1244 0.84 -0.3
564,241 - GFF1244 0.84 -0.1
564,241 - GFF1244 0.84 -0.9
564,892 + GFF1245 0.31 +0.8
564,892 + GFF1245 0.31 -1.6
564,893 - GFF1245 0.31 +0.4
564,893 - GFF1245 0.31 -1.0
564,893 - GFF1245 0.31 -0.3
564,893 - GFF1245 0.31 +0.2
564,893 - GFF1245 0.31 -0.1
564,923 - GFF1245 0.33 +0.6

Or see this region's nucleotide sequence