Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1155 and GFF1156 are separated by 16 nucleotides GFF1156 and GFF1157 overlap by 4 nucleotides GFF1157 and GFF1158 are separated by 281 nucleotides
GFF1155 - Putative transmembrane protein, at 471,162 to 471,986
GFF1155
GFF1156 - Putative transmembrane protein, at 472,003 to 472,425
GFF1156
GFF1157 - DNA-directed RNA polymerase specialized sigma subunit, sigma24-like, at 472,422 to 472,988
GFF1157
GFF1158 - Acetolactate synthase large subunit (EC 2.2.1.6), at 473,270 to 475,054
GFF1158
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.526 kb on + strand, within GFF1155 at 471.526 kb on + strand, within GFF1155 at 471.526 kb on + strand, within GFF1155 at 471.527 kb on - strand, within GFF1155 at 471.527 kb on - strand, within GFF1155 at 471.527 kb on - strand, within GFF1155 at 471.527 kb on - strand, within GFF1155 at 471.527 kb on - strand, within GFF1155 at 471.679 kb on + strand, within GFF1155 at 471.679 kb on + strand, within GFF1155 at 471.679 kb on + strand, within GFF1155 at 471.680 kb on - strand, within GFF1155 at 471.680 kb on - strand, within GFF1155 at 471.680 kb on - strand, within GFF1155 at 471.680 kb on - strand, within GFF1155 at 471.956 kb on + strand at 471.956 kb on + strand at 471.956 kb on + strand at 471.956 kb on + strand at 471.956 kb on + strand at 471.956 kb on + strand at 471.956 kb on + strand at 471.957 kb on - strand at 471.957 kb on - strand at 471.957 kb on - strand at 471.957 kb on - strand at 472.053 kb on + strand, within GFF1156 at 472.054 kb on - strand, within GFF1156 at 472.054 kb on - strand, within GFF1156 at 472.135 kb on + strand, within GFF1156 at 472.135 kb on + strand, within GFF1156 at 472.135 kb on + strand, within GFF1156 at 472.136 kb on - strand, within GFF1156 at 472.136 kb on - strand, within GFF1156 at 472.136 kb on - strand, within GFF1156 at 472.416 kb on + strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.419 kb on + strand at 472.419 kb on + strand at 472.419 kb on + strand at 472.419 kb on + strand at 472.419 kb on + strand at 472.420 kb on - strand at 472.420 kb on - strand at 472.420 kb on - strand at 472.420 kb on - strand at 472.420 kb on - strand at 472.420 kb on - strand at 472.425 kb on + strand at 472.425 kb on + strand at 472.425 kb on + strand at 472.431 kb on + strand at 472.431 kb on + strand at 472.553 kb on - strand, within GFF1157 at 472.553 kb on - strand, within GFF1157 at 472.664 kb on + strand, within GFF1157 at 472.665 kb on - strand, within GFF1157 at 472.849 kb on + strand, within GFF1157 at 472.849 kb on + strand, within GFF1157 at 472.849 kb on + strand, within GFF1157 at 472.850 kb on - strand, within GFF1157 at 472.886 kb on + strand, within GFF1157 at 472.918 kb on + strand, within GFF1157 at 472.918 kb on + strand, within GFF1157 at 472.918 kb on + strand, within GFF1157 at 472.918 kb on + strand, within GFF1157 at 472.919 kb on - strand, within GFF1157 at 472.974 kb on + strand at 472.974 kb on + strand at 472.974 kb on + strand at 472.974 kb on + strand at 472.974 kb on + strand at 472.974 kb on + strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 472.975 kb on - strand at 473.031 kb on + strand at 473.031 kb on + strand at 473.031 kb on + strand at 473.032 kb on - strand at 473.032 kb on - strand at 473.042 kb on + strand at 473.042 kb on + strand at 473.042 kb on + strand at 473.042 kb on + strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.043 kb on - strand at 473.061 kb on + strand at 473.061 kb on + strand at 473.061 kb on + strand at 473.062 kb on - strand at 473.062 kb on - strand at 473.077 kb on + strand at 473.077 kb on + strand at 473.077 kb on + strand at 473.078 kb on - strand at 473.078 kb on - strand at 473.118 kb on + strand at 473.238 kb on + strand at 473.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 471,526 + GFF1155 0.44 -0.0 471,526 + GFF1155 0.44 -0.8 471,526 + GFF1155 0.44 -0.1 471,527 - GFF1155 0.44 +0.3 471,527 - GFF1155 0.44 +0.1 471,527 - GFF1155 0.44 -0.3 471,527 - GFF1155 0.44 -1.4 471,527 - GFF1155 0.44 +1.2 471,679 + GFF1155 0.63 -2.2 471,679 + GFF1155 0.63 +0.9 471,679 + GFF1155 0.63 -0.4 471,680 - GFF1155 0.63 -0.4 471,680 - GFF1155 0.63 +0.6 471,680 - GFF1155 0.63 +0.0 471,680 - GFF1155 0.63 +1.1 471,956 + +0.0 471,956 + +0.0 471,956 + -0.1 471,956 + -1.1 471,956 + -0.6 471,956 + -0.7 471,956 + -0.5 471,957 - -1.3 471,957 - -1.1 471,957 - -0.7 471,957 - +0.6 472,053 + GFF1156 0.12 +0.3 472,054 - GFF1156 0.12 -0.1 472,054 - GFF1156 0.12 +0.8 472,135 + GFF1156 0.31 +0.9 472,135 + GFF1156 0.31 +1.3 472,135 + GFF1156 0.31 -0.3 472,136 - GFF1156 0.31 +0.4 472,136 - GFF1156 0.31 +0.6 472,136 - GFF1156 0.31 +0.9 472,416 + -0.4 472,417 - +2.3 472,417 - -0.4 472,417 - +0.3 472,417 - -0.6 472,417 - -0.4 472,417 - -0.4 472,417 - -0.4 472,417 - -0.4 472,417 - -0.1 472,417 - -0.2 472,419 + -0.4 472,419 + +0.2 472,419 + +0.2 472,419 + -1.0 472,419 + +0.0 472,420 - -0.4 472,420 - +0.0 472,420 - +0.3 472,420 - -0.3 472,420 - +0.4 472,420 - +0.1 472,425 + +1.6 472,425 + +0.0 472,425 + -1.6 472,431 + +1.3 472,431 + +1.0 472,553 - GFF1157 0.23 +0.1 472,553 - GFF1157 0.23 -0.3 472,664 + GFF1157 0.43 -0.6 472,665 - GFF1157 0.43 -0.8 472,849 + GFF1157 0.75 +1.0 472,849 + GFF1157 0.75 -0.4 472,849 + GFF1157 0.75 -1.6 472,850 - GFF1157 0.75 +0.6 472,886 + GFF1157 0.82 -1.2 472,918 + GFF1157 0.87 -1.8 472,918 + GFF1157 0.87 -1.1 472,918 + GFF1157 0.87 +0.6 472,918 + GFF1157 0.87 -0.9 472,919 - GFF1157 0.88 -0.4 472,974 + -1.6 472,974 + +0.5 472,974 + -0.7 472,974 + +0.0 472,974 + -0.5 472,974 + +0.1 472,975 - -2.2 472,975 - -0.4 472,975 - -1.0 472,975 - -0.0 472,975 - -0.8 472,975 - -0.6 472,975 - -0.4 472,975 - -0.7 473,031 + -2.1 473,031 + -1.0 473,031 + -0.6 473,032 - -0.6 473,032 - +0.3 473,042 + -1.4 473,042 + -0.1 473,042 + -0.1 473,042 + -1.0 473,043 - -0.6 473,043 - -0.4 473,043 - -1.8 473,043 - +1.6 473,043 - +0.5 473,043 - -1.0 473,043 - -1.2 473,043 - +1.6 473,061 + +0.7 473,061 + -1.2 473,061 + -0.3 473,062 - -1.0 473,062 - -0.7 473,077 + -1.7 473,077 + +1.2 473,077 + +1.0 473,078 - +0.0 473,078 - -0.7 473,118 + -0.3 473,238 + -1.4 473,238 + -0.7
Or see this region's nucleotide sequence