Strain Fitness in Variovorax sp. SCN45 around GFF108

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF107 and GFF108 are separated by 68 nucleotidesGFF108 and GFF109 are separated by 141 nucleotides GFF107 - General secretion pathway protein K, at 134,887 to 135,846 GFF107 GFF108 - General secretion pathway protein G, at 135,915 to 136,385 GFF108 GFF109 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 136,527 to 139,229 GFF109 Position (kb) 135 136 137Strain fitness (log2 ratio) -1 0 1at 135.623 kb on + strand, within GFF107at 135.623 kb on + strand, within GFF107at 136.015 kb on + strand, within GFF108at 136.016 kb on - strand, within GFF108at 136.016 kb on - strand, within GFF108at 136.021 kb on + strand, within GFF108at 136.138 kb on + strand, within GFF108at 136.139 kb on - strand, within GFF108at 137.142 kb on + strand, within GFF109at 137.154 kb on - strand, within GFF109

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
135,623 + GFF107 0.77 -0.7
135,623 + GFF107 0.77 +0.4
136,015 + GFF108 0.21 +0.6
136,016 - GFF108 0.21 +0.2
136,016 - GFF108 0.21 -0.2
136,021 + GFF108 0.23 -0.6
136,138 + GFF108 0.47 -1.0
136,139 - GFF108 0.48 -1.6
137,142 + GFF109 0.23 +0.6
137,154 - GFF109 0.23 +0.4

Or see this region's nucleotide sequence