Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7273 and GFF7274 overlap by 4 nucleotides GFF7274 and GFF7275 are separated by 93 nucleotides GFF7275 and GFF7276 are separated by 128 nucleotides
GFF7273 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 22,624 to 23,481
GFF7273
GFF7274 - hypothetical protein, at 23,478 to 24,575
GFF7274
GFF7275 - no description, at 24,669 to 24,794
GFF7275
GFF7276 - Thioesterase, at 24,923 to 25,354
GFF7276
Position (kb) 23
24
25 Strain fitness (log2 ratio) -1
0
1
2 at 22.659 kb on - strand at 22.939 kb on + strand, within GFF7273 at 22.940 kb on - strand, within GFF7273 at 23.080 kb on + strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.266 kb on + strand, within GFF7273 at 23.285 kb on - strand, within GFF7273 at 23.296 kb on + strand, within GFF7273 at 23.457 kb on + strand at 23.873 kb on - strand, within GFF7274 at 24.223 kb on - strand, within GFF7274 at 24.410 kb on - strand, within GFF7274 at 24.436 kb on + strand, within GFF7274 at 24.437 kb on - strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.439 kb on - strand, within GFF7274 at 24.680 kb on - strand at 24.821 kb on + strand at 24.880 kb on - strand at 24.880 kb on - strand at 24.911 kb on + strand at 24.912 kb on - strand at 25.020 kb on + strand, within GFF7276 at 25.443 kb on + strand at 25.443 kb on + strand at 25.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 22,659 - -0.5 22,939 + GFF7273 0.37 +1.4 22,940 - GFF7273 0.37 +0.7 23,080 + GFF7273 0.53 -0.8 23,081 - GFF7273 0.53 -0.3 23,081 - GFF7273 0.53 -0.5 23,081 - GFF7273 0.53 -0.9 23,266 + GFF7273 0.75 +0.4 23,285 - GFF7273 0.77 -0.8 23,296 + GFF7273 0.78 -0.4 23,457 + +0.4 23,873 - GFF7274 0.36 -0.6 24,223 - GFF7274 0.68 -0.1 24,410 - GFF7274 0.85 -0.2 24,436 + GFF7274 0.87 -1.3 24,437 - GFF7274 0.87 -0.9 24,438 + GFF7274 0.87 -0.2 24,438 + GFF7274 0.87 +0.1 24,439 - GFF7274 0.88 -0.2 24,680 - -0.2 24,821 + +0.3 24,880 - +2.7 24,880 - -0.5 24,911 + +1.7 24,912 - -0.2 25,020 + GFF7276 0.22 +0.2 25,443 + -0.4 25,443 + -0.6 25,444 - -1.3
Or see this region's nucleotide sequence