Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7190 and GFF7191 overlap by 4 nucleotides GFF7191 and GFF7192 are separated by 59 nucleotides
GFF7190 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 7,085 to 8,455
GFF7190
GFF7191 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 8,452 to 9,633
GFF7191
GFF7192 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 9,693 to 11,291
GFF7192
Position (kb) 8
9
10 Strain fitness (log2 ratio) -2
-1
0
1 at 7.455 kb on + strand, within GFF7190 at 7.455 kb on + strand, within GFF7190 at 7.456 kb on - strand, within GFF7190 at 7.595 kb on + strand, within GFF7190 at 7.596 kb on - strand, within GFF7190 at 7.658 kb on + strand, within GFF7190 at 7.658 kb on + strand, within GFF7190 at 7.659 kb on - strand, within GFF7190 at 7.659 kb on - strand, within GFF7190 at 7.703 kb on + strand, within GFF7190 at 7.704 kb on - strand, within GFF7190 at 7.704 kb on - strand, within GFF7190 at 7.976 kb on + strand, within GFF7190 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.906 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 9.844 kb on + strand at 9.845 kb on - strand at 9.880 kb on - strand, within GFF7192 at 10.368 kb on + strand, within GFF7192 at 10.369 kb on - strand, within GFF7192
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 7,455 + GFF7190 0.27 -0.4 7,455 + GFF7190 0.27 -0.8 7,456 - GFF7190 0.27 -0.5 7,595 + GFF7190 0.37 -0.5 7,596 - GFF7190 0.37 -0.7 7,658 + GFF7190 0.42 -0.5 7,658 + GFF7190 0.42 -0.2 7,659 - GFF7190 0.42 +0.6 7,659 - GFF7190 0.42 -1.1 7,703 + GFF7190 0.45 +0.0 7,704 - GFF7190 0.45 +0.1 7,704 - GFF7190 0.45 +0.1 7,976 + GFF7190 0.65 -0.1 8,905 + GFF7191 0.38 -0.0 8,905 + GFF7191 0.38 -0.0 8,905 + GFF7191 0.38 +0.1 8,906 - GFF7191 0.38 -0.8 8,981 - GFF7191 0.45 -0.6 8,981 - GFF7191 0.45 -1.3 8,981 - GFF7191 0.45 -0.3 9,844 + +0.3 9,845 - +0.0 9,880 - GFF7192 0.12 -1.7 10,368 + GFF7192 0.42 -0.1 10,369 - GFF7192 0.42 -2.1
Or see this region's nucleotide sequence