Strain Fitness in Variovorax sp. SCN45 around GFF7089

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7088 and GFF7089 are separated by 4 nucleotidesGFF7089 and GFF7090 are separated by 23 nucleotidesGFF7090 and GFF7091 are separated by 8 nucleotidesGFF7091 and GFF7092 overlap by 4 nucleotides GFF7088 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 10,589 to 11,956 GFF7088 GFF7089 - Putative short-chain dehydrogenase, at 11,961 to 12,749 GFF7089 GFF7090 - Small subunit naph/bph dioxygenase, at 12,773 to 13,366 GFF7090 GFF7091 - no description, at 13,375 to 13,554 GFF7091 GFF7092 - no description, at 13,551 to 13,703 GFF7092 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1 2 3at 10.973 kb on + strand, within GFF7088at 10.973 kb on + strand, within GFF7088at 10.973 kb on + strand, within GFF7088at 10.974 kb on - strand, within GFF7088at 10.984 kb on + strand, within GFF7088at 10.984 kb on + strand, within GFF7088at 10.984 kb on + strand, within GFF7088at 10.985 kb on - strand, within GFF7088at 10.985 kb on - strand, within GFF7088at 11.033 kb on + strand, within GFF7088at 11.033 kb on + strand, within GFF7088at 11.033 kb on + strand, within GFF7088at 11.033 kb on + strand, within GFF7088at 11.033 kb on + strand, within GFF7088at 11.034 kb on - strand, within GFF7088at 11.034 kb on - strand, within GFF7088at 11.034 kb on - strand, within GFF7088at 11.034 kb on - strand, within GFF7088at 11.079 kb on + strand, within GFF7088at 11.080 kb on - strand, within GFF7088at 11.080 kb on - strand, within GFF7088at 11.087 kb on + strand, within GFF7088at 11.087 kb on + strand, within GFF7088at 11.087 kb on + strand, within GFF7088at 11.087 kb on + strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.088 kb on - strand, within GFF7088at 11.230 kb on + strand, within GFF7088at 11.230 kb on + strand, within GFF7088at 11.230 kb on + strand, within GFF7088at 11.231 kb on - strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.234 kb on + strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.235 kb on - strand, within GFF7088at 11.324 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.414 kb on + strand, within GFF7088at 11.415 kb on - strand, within GFF7088at 11.441 kb on + strand, within GFF7088at 11.441 kb on + strand, within GFF7088at 11.442 kb on - strand, within GFF7088at 11.476 kb on + strand, within GFF7088at 11.476 kb on + strand, within GFF7088at 11.476 kb on + strand, within GFF7088at 11.476 kb on + strand, within GFF7088at 11.476 kb on + strand, within GFF7088at 11.477 kb on - strand, within GFF7088at 11.477 kb on - strand, within GFF7088at 11.522 kb on + strand, within GFF7088at 11.522 kb on + strand, within GFF7088at 11.522 kb on + strand, within GFF7088at 11.523 kb on - strand, within GFF7088at 11.643 kb on + strand, within GFF7088at 11.643 kb on + strand, within GFF7088at 11.644 kb on - strand, within GFF7088at 11.644 kb on - strand, within GFF7088at 11.644 kb on - strand, within GFF7088at 11.644 kb on - strand, within GFF7088at 11.644 kb on - strand, within GFF7088at 11.659 kb on + strand, within GFF7088at 11.659 kb on + strand, within GFF7088at 11.659 kb on + strand, within GFF7088at 11.659 kb on + strand, within GFF7088at 11.660 kb on - strand, within GFF7088at 11.660 kb on - strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.663 kb on + strand, within GFF7088at 11.664 kb on - strand, within GFF7088at 11.664 kb on - strand, within GFF7088at 11.664 kb on - strand, within GFF7088at 11.664 kb on - strand, within GFF7088at 11.664 kb on - strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.666 kb on + strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.667 kb on - strand, within GFF7088at 11.726 kb on + strand, within GFF7088at 11.726 kb on + strand, within GFF7088at 11.726 kb on + strand, within GFF7088at 11.727 kb on - strand, within GFF7088at 11.777 kb on + strand, within GFF7088at 11.777 kb on + strand, within GFF7088at 11.778 kb on - strand, within GFF7088at 11.778 kb on - strand, within GFF7088at 11.885 kb on + strandat 11.885 kb on + strandat 11.885 kb on + strandat 11.885 kb on + strandat 11.886 kb on - strandat 11.886 kb on - strandat 11.886 kb on - strandat 11.886 kb on - strandat 11.886 kb on - strandat 11.886 kb on - strandat 12.207 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.321 kb on + strand, within GFF7089at 12.322 kb on - strand, within GFF7089at 12.322 kb on - strand, within GFF7089at 12.322 kb on - strand, within GFF7089at 12.322 kb on - strand, within GFF7089at 12.322 kb on - strand, within GFF7089at 12.426 kb on + strand, within GFF7089at 12.426 kb on + strand, within GFF7089at 12.426 kb on + strand, within GFF7089at 12.427 kb on - strand, within GFF7089at 12.474 kb on + strand, within GFF7089at 12.475 kb on - strand, within GFF7089at 12.475 kb on - strand, within GFF7089at 12.475 kb on - strand, within GFF7089at 12.608 kb on - strand, within GFF7089at 12.637 kb on + strand, within GFF7089at 12.638 kb on - strand, within GFF7089at 12.718 kb on - strandat 12.826 kb on + strandat 12.827 kb on - strandat 12.845 kb on + strand, within GFF7090at 12.845 kb on + strand, within GFF7090at 12.846 kb on - strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.848 kb on + strand, within GFF7090at 12.849 kb on - strand, within GFF7090at 12.849 kb on - strand, within GFF7090at 12.849 kb on - strand, within GFF7090at 12.953 kb on + strand, within GFF7090at 12.954 kb on - strand, within GFF7090at 12.954 kb on - strand, within GFF7090at 12.954 kb on - strand, within GFF7090at 13.150 kb on + strand, within GFF7090at 13.151 kb on - strand, within GFF7090at 13.168 kb on + strand, within GFF7090at 13.168 kb on + strand, within GFF7090at 13.168 kb on + strand, within GFF7090at 13.168 kb on + strand, within GFF7090at 13.169 kb on - strand, within GFF7090at 13.169 kb on - strand, within GFF7090at 13.169 kb on - strand, within GFF7090at 13.214 kb on + strand, within GFF7090at 13.214 kb on + strand, within GFF7090at 13.214 kb on + strand, within GFF7090at 13.215 kb on - strand, within GFF7090at 13.233 kb on - strand, within GFF7090at 13.241 kb on + strand, within GFF7090at 13.241 kb on + strand, within GFF7090at 13.242 kb on - strand, within GFF7090at 13.332 kb on + strandat 13.332 kb on + strandat 13.332 kb on + strandat 13.333 kb on - strandat 13.333 kb on - strandat 13.365 kb on - strandat 13.365 kb on - strandat 13.395 kb on + strand, within GFF7091at 13.409 kb on + strand, within GFF7091at 13.410 kb on - strand, within GFF7091at 13.449 kb on - strand, within GFF7091at 13.602 kb on + strand, within GFF7092at 13.602 kb on + strand, within GFF7092at 13.603 kb on - strand, within GFF7092at 13.603 kb on - strand, within GFF7092at 13.603 kb on - strand, within GFF7092at 13.603 kb on - strand, within GFF7092at 13.603 kb on - strand, within GFF7092at 13.667 kb on + strand, within GFF7092at 13.667 kb on + strand, within GFF7092at 13.668 kb on - strand, within GFF7092at 13.668 kb on - strand, within GFF7092at 13.668 kb on - strand, within GFF7092at 13.668 kb on - strand, within GFF7092at 13.668 kb on - strand, within GFF7092

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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10,973 + GFF7088 0.28 -0.0
10,973 + GFF7088 0.28 -0.0
10,973 + GFF7088 0.28 -0.3
10,974 - GFF7088 0.28 +0.4
10,984 + GFF7088 0.29 +0.6
10,984 + GFF7088 0.29 -0.8
10,984 + GFF7088 0.29 -0.9
10,985 - GFF7088 0.29 -0.7
10,985 - GFF7088 0.29 -0.5
11,033 + GFF7088 0.32 -1.0
11,033 + GFF7088 0.32 -0.5
11,033 + GFF7088 0.32 -0.3
11,033 + GFF7088 0.32 -0.2
11,033 + GFF7088 0.32 -0.4
11,034 - GFF7088 0.33 -0.8
11,034 - GFF7088 0.33 +1.0
11,034 - GFF7088 0.33 -0.0
11,034 - GFF7088 0.33 +0.8
11,079 + GFF7088 0.36 -0.5
11,080 - GFF7088 0.36 +1.0
11,080 - GFF7088 0.36 +0.5
11,087 + GFF7088 0.36 -0.3
11,087 + GFF7088 0.36 -1.6
11,087 + GFF7088 0.36 -0.4
11,087 + GFF7088 0.36 +0.8
11,088 - GFF7088 0.36 -0.6
11,088 - GFF7088 0.36 -1.1
11,088 - GFF7088 0.36 -1.9
11,088 - GFF7088 0.36 +0.5
11,088 - GFF7088 0.36 -2.0
11,088 - GFF7088 0.36 +1.1
11,088 - GFF7088 0.36 -0.1
11,088 - GFF7088 0.36 -0.4
11,088 - GFF7088 0.36 -0.0
11,088 - GFF7088 0.36 +0.6
11,088 - GFF7088 0.36 -0.8
11,230 + GFF7088 0.47 -0.8
11,230 + GFF7088 0.47 +0.3
11,230 + GFF7088 0.47 +0.7
11,231 - GFF7088 0.47 -1.3
11,234 + GFF7088 0.47 -1.4
11,234 + GFF7088 0.47 +0.0
11,234 + GFF7088 0.47 +0.8
11,234 + GFF7088 0.47 -0.4
11,234 + GFF7088 0.47 -0.5
11,234 + GFF7088 0.47 -0.6
11,234 + GFF7088 0.47 -1.1
11,234 + GFF7088 0.47 +0.3
11,234 + GFF7088 0.47 +0.6
11,234 + GFF7088 0.47 -0.7
11,234 + GFF7088 0.47 +0.4
11,235 - GFF7088 0.47 +0.9
11,235 - GFF7088 0.47 +0.9
11,235 - GFF7088 0.47 -0.5
11,235 - GFF7088 0.47 -0.6
11,235 - GFF7088 0.47 -1.0
11,235 - GFF7088 0.47 -0.6
11,235 - GFF7088 0.47 -0.1
11,324 + GFF7088 0.54 -0.2
11,414 + GFF7088 0.60 -0.3
11,414 + GFF7088 0.60 -0.7
11,414 + GFF7088 0.60 -0.1
11,414 + GFF7088 0.60 -0.1
11,414 + GFF7088 0.60 -0.1
11,414 + GFF7088 0.60 +1.3
11,414 + GFF7088 0.60 +0.2
11,415 - GFF7088 0.60 -0.2
11,441 + GFF7088 0.62 +0.2
11,441 + GFF7088 0.62 -0.2
11,442 - GFF7088 0.62 +3.3
11,476 + GFF7088 0.65 -0.1
11,476 + GFF7088 0.65 -0.5
11,476 + GFF7088 0.65 -0.3
11,476 + GFF7088 0.65 -0.6
11,476 + GFF7088 0.65 -0.2
11,477 - GFF7088 0.65 +0.0
11,477 - GFF7088 0.65 -1.1
11,522 + GFF7088 0.68 -0.5
11,522 + GFF7088 0.68 -0.0
11,522 + GFF7088 0.68 -0.2
11,523 - GFF7088 0.68 -0.7
11,643 + GFF7088 0.77 +0.3
11,643 + GFF7088 0.77 +0.1
11,644 - GFF7088 0.77 +0.5
11,644 - GFF7088 0.77 -0.8
11,644 - GFF7088 0.77 +0.6
11,644 - GFF7088 0.77 -0.4
11,644 - GFF7088 0.77 -0.3
11,659 + GFF7088 0.78 -0.6
11,659 + GFF7088 0.78 -0.4
11,659 + GFF7088 0.78 -0.1
11,659 + GFF7088 0.78 -0.4
11,660 - GFF7088 0.78 -0.0
11,660 - GFF7088 0.78 -0.1
11,663 + GFF7088 0.79 +1.5
11,663 + GFF7088 0.79 +0.3
11,663 + GFF7088 0.79 -0.3
11,663 + GFF7088 0.79 -0.0
11,663 + GFF7088 0.79 +0.4
11,663 + GFF7088 0.79 -0.4
11,663 + GFF7088 0.79 +0.3
11,664 - GFF7088 0.79 -0.4
11,664 - GFF7088 0.79 +1.5
11,664 - GFF7088 0.79 -0.2
11,664 - GFF7088 0.79 +0.8
11,664 - GFF7088 0.79 +0.2
11,666 + GFF7088 0.79 -0.0
11,666 + GFF7088 0.79 +0.0
11,666 + GFF7088 0.79 +0.1
11,666 + GFF7088 0.79 -0.5
11,666 + GFF7088 0.79 -0.2
11,666 + GFF7088 0.79 +0.4
11,666 + GFF7088 0.79 -0.8
11,666 + GFF7088 0.79 -0.3
11,666 + GFF7088 0.79 -0.9
11,666 + GFF7088 0.79 +0.1
11,666 + GFF7088 0.79 +0.2
11,666 + GFF7088 0.79 +0.5
11,666 + GFF7088 0.79 -0.7
11,667 - GFF7088 0.79 +1.2
11,667 - GFF7088 0.79 -0.4
11,667 - GFF7088 0.79 -0.5
11,667 - GFF7088 0.79 -0.6
11,667 - GFF7088 0.79 -0.2
11,667 - GFF7088 0.79 -0.1
11,667 - GFF7088 0.79 +1.2
11,667 - GFF7088 0.79 -0.8
11,667 - GFF7088 0.79 -1.0
11,667 - GFF7088 0.79 -0.7
11,667 - GFF7088 0.79 +0.4
11,667 - GFF7088 0.79 -0.7
11,726 + GFF7088 0.83 +3.1
11,726 + GFF7088 0.83 -0.3
11,726 + GFF7088 0.83 -1.3
11,727 - GFF7088 0.83 +0.1
11,777 + GFF7088 0.87 -0.3
11,777 + GFF7088 0.87 +0.9
11,778 - GFF7088 0.87 -0.2
11,778 - GFF7088 0.87 -0.9
11,885 + -1.4
11,885 + +0.2
11,885 + +0.2
11,885 + +0.5
11,886 - +0.8
11,886 - +1.3
11,886 - -2.1
11,886 - +0.5
11,886 - -1.8
11,886 - -0.9
12,207 + GFF7089 0.31 +0.9
12,321 + GFF7089 0.46 -0.7
12,321 + GFF7089 0.46 -0.0
12,321 + GFF7089 0.46 -0.1
12,321 + GFF7089 0.46 +0.3
12,321 + GFF7089 0.46 +0.1
12,321 + GFF7089 0.46 -0.7
12,322 - GFF7089 0.46 -0.3
12,322 - GFF7089 0.46 +1.2
12,322 - GFF7089 0.46 -0.1
12,322 - GFF7089 0.46 +0.4
12,322 - GFF7089 0.46 -1.8
12,426 + GFF7089 0.59 -0.1
12,426 + GFF7089 0.59 +0.0
12,426 + GFF7089 0.59 +0.4
12,427 - GFF7089 0.59 +0.4
12,474 + GFF7089 0.65 -1.4
12,475 - GFF7089 0.65 -0.1
12,475 - GFF7089 0.65 +1.0
12,475 - GFF7089 0.65 +1.8
12,608 - GFF7089 0.82 -0.4
12,637 + GFF7089 0.86 +0.8
12,638 - GFF7089 0.86 -1.0
12,718 - -0.6
12,826 + +0.2
12,827 - -0.6
12,845 + GFF7090 0.12 -0.4
12,845 + GFF7090 0.12 +0.2
12,846 - GFF7090 0.12 -0.4
12,848 + GFF7090 0.13 +0.0
12,848 + GFF7090 0.13 +0.1
12,848 + GFF7090 0.13 -0.3
12,848 + GFF7090 0.13 -1.4
12,848 + GFF7090 0.13 +0.4
12,848 + GFF7090 0.13 -0.2
12,849 - GFF7090 0.13 -0.0
12,849 - GFF7090 0.13 +0.2
12,849 - GFF7090 0.13 -0.2
12,953 + GFF7090 0.30 +0.2
12,954 - GFF7090 0.30 +0.7
12,954 - GFF7090 0.30 +0.9
12,954 - GFF7090 0.30 +0.1
13,150 + GFF7090 0.63 -0.3
13,151 - GFF7090 0.64 -1.1
13,168 + GFF7090 0.66 +0.4
13,168 + GFF7090 0.66 -0.0
13,168 + GFF7090 0.66 +0.3
13,168 + GFF7090 0.66 -1.9
13,169 - GFF7090 0.67 -0.6
13,169 - GFF7090 0.67 +1.0
13,169 - GFF7090 0.67 +1.1
13,214 + GFF7090 0.74 -0.2
13,214 + GFF7090 0.74 -0.4
13,214 + GFF7090 0.74 +0.9
13,215 - GFF7090 0.74 +0.2
13,233 - GFF7090 0.77 +0.6
13,241 + GFF7090 0.79 +0.4
13,241 + GFF7090 0.79 -0.4
13,242 - GFF7090 0.79 -0.6
13,332 + -0.8
13,332 + +0.5
13,332 + +0.5
13,333 - -0.8
13,333 - -0.0
13,365 - +1.0
13,365 - -0.8
13,395 + GFF7091 0.11 -0.0
13,409 + GFF7091 0.19 -0.3
13,410 - GFF7091 0.19 +0.4
13,449 - GFF7091 0.41 -0.6
13,602 + GFF7092 0.33 +0.5
13,602 + GFF7092 0.33 +0.3
13,603 - GFF7092 0.34 -0.7
13,603 - GFF7092 0.34 +1.1
13,603 - GFF7092 0.34 -0.3
13,603 - GFF7092 0.34 +0.1
13,603 - GFF7092 0.34 -0.3
13,667 + GFF7092 0.76 -0.7
13,667 + GFF7092 0.76 +1.5
13,668 - GFF7092 0.76 -0.5
13,668 - GFF7092 0.76 -1.3
13,668 - GFF7092 0.76 -0.2
13,668 - GFF7092 0.76 +0.8
13,668 - GFF7092 0.76 -0.6

Or see this region's nucleotide sequence