Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6942 and GFF6943 overlap by 4 nucleotides GFF6943 and GFF6944 are separated by 189 nucleotides GFF6944 and GFF6945 are separated by 101 nucleotides GFF6945 and GFF6946 overlap by 8 nucleotides
GFF6942 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,256 to 18,113
GFF6942
GFF6943 - no description, at 18,110 to 18,499
GFF6943
GFF6944 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 18,689 to 21,061
GFF6944
GFF6945 - Two-component transcriptional response regulator, OmpR family, at 21,163 to 21,891
GFF6945
GFF6946 - Sensory box histidine kinase/response regulator, at 21,884 to 24,001
GFF6946
Position (kb) 18
19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 18.610 kb on - strand at 18.764 kb on + strand at 18.764 kb on + strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.998 kb on + strand, within GFF6944 at 18.998 kb on + strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 19.020 kb on + strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.140 kb on - strand, within GFF6944 at 19.397 kb on + strand, within GFF6944 at 19.398 kb on - strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.575 kb on - strand, within GFF6944 at 19.575 kb on - strand, within GFF6944 at 20.111 kb on + strand, within GFF6944 at 20.252 kb on + strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.380 kb on + strand, within GFF6944 at 20.381 kb on - strand, within GFF6944 at 20.424 kb on - strand, within GFF6944 at 20.799 kb on - strand, within GFF6944 at 20.837 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.083 kb on + strand at 21.083 kb on + strand at 21.084 kb on - strand at 21.106 kb on + strand at 21.106 kb on + strand at 21.130 kb on + strand at 21.130 kb on + strand at 21.146 kb on + strand at 21.146 kb on + strand at 21.147 kb on - strand at 21.147 kb on - strand at 21.207 kb on + strand at 21.208 kb on - strand at 21.229 kb on + strand at 21.230 kb on - strand at 21.230 kb on - strand at 21.449 kb on + strand, within GFF6945 at 21.449 kb on + strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.463 kb on + strand, within GFF6945 at 21.859 kb on + strand at 21.936 kb on + strand at 21.937 kb on - strand at 21.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,610 - -0.3 18,764 + -0.0 18,764 + -1.1 18,765 - +0.1 18,765 - -0.2 18,765 - +0.1 18,785 + +0.8 18,785 + -1.0 18,887 + +0.3 18,887 + +1.4 18,887 + +0.6 18,888 - +0.8 18,888 - +0.3 18,888 - -0.2 18,888 - -0.3 18,888 - -1.9 18,998 + GFF6944 0.13 -0.5 18,998 + GFF6944 0.13 -0.7 18,999 - GFF6944 0.13 +1.0 18,999 - GFF6944 0.13 -1.0 19,020 + GFF6944 0.14 -0.3 19,021 - GFF6944 0.14 -0.7 19,021 - GFF6944 0.14 +0.4 19,021 - GFF6944 0.14 -1.5 19,140 - GFF6944 0.19 -0.3 19,397 + GFF6944 0.30 -0.2 19,398 - GFF6944 0.30 +0.3 19,574 + GFF6944 0.37 +0.0 19,574 + GFF6944 0.37 -0.5 19,574 + GFF6944 0.37 +0.4 19,574 + GFF6944 0.37 -0.7 19,574 + GFF6944 0.37 -0.6 19,575 - GFF6944 0.37 -0.1 19,575 - GFF6944 0.37 -1.2 20,111 + GFF6944 0.60 -0.2 20,252 + GFF6944 0.66 +0.4 20,253 - GFF6944 0.66 -1.3 20,253 - GFF6944 0.66 -0.2 20,253 - GFF6944 0.66 -1.2 20,253 - GFF6944 0.66 +0.4 20,361 - GFF6944 0.70 +1.4 20,361 - GFF6944 0.70 -1.2 20,380 + GFF6944 0.71 +0.2 20,381 - GFF6944 0.71 +0.1 20,424 - GFF6944 0.73 +0.2 20,799 - GFF6944 0.89 -0.2 20,837 + -0.7 21,002 + -0.5 21,002 + -1.6 21,002 + -0.7 21,002 + -0.5 21,002 + -0.3 21,003 - +0.2 21,003 - +0.8 21,003 - -0.4 21,003 - +0.2 21,003 - +0.1 21,083 + -1.5 21,083 + +0.8 21,084 - -1.0 21,106 + -0.2 21,106 + -0.3 21,130 + -0.3 21,130 + +0.8 21,146 + +0.2 21,146 + -1.9 21,147 - -1.7 21,147 - +0.8 21,207 + +0.5 21,208 - +0.2 21,229 + +0.8 21,230 - +0.5 21,230 - +1.6 21,449 + GFF6945 0.39 +0.9 21,449 + GFF6945 0.39 +0.2 21,450 - GFF6945 0.39 +0.8 21,450 - GFF6945 0.39 +1.6 21,450 - GFF6945 0.39 +0.3 21,463 + GFF6945 0.41 +0.3 21,859 + +0.9 21,936 + -0.1 21,937 - +0.2 21,937 - +0.5
Or see this region's nucleotide sequence