Strain Fitness in Variovorax sp. SCN45 around GFF6680

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6678 and GFF6679 are separated by 208 nucleotidesGFF6679 and GFF6680 are separated by 62 nucleotidesGFF6680 and GFF6681 are separated by 6 nucleotides GFF6678 - Putative inner membrane protein, at 53,158 to 54,381 GFF6678 GFF6679 - hypothetical protein, at 54,590 to 54,874 GFF6679 GFF6680 - Aspartate ammonia-lyase (EC 4.3.1.1), at 54,937 to 56,592 GFF6680 GFF6681 - TonB-dependent siderophore receptor, at 56,599 to 58,779 GFF6681 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.034 kb on + strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.035 kb on - strand, within GFF6678at 54.067 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.079 kb on + strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.080 kb on - strand, within GFF6678at 54.127 kb on + strand, within GFF6678at 54.128 kb on - strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.136 kb on + strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.137 kb on - strand, within GFF6678at 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.405 kb on + strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.406 kb on - strandat 54.606 kb on + strandat 54.607 kb on - strandat 54.755 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.776 kb on + strand, within GFF6679at 54.777 kb on + strand, within GFF6679at 54.872 kb on + strandat 54.873 kb on - strandat 54.897 kb on + strandat 54.897 kb on + strandat 54.897 kb on + strandat 54.898 kb on - strandat 54.898 kb on - strandat 54.898 kb on - strandat 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.633 kb on + strand, within GFF6680at 55.634 kb on - strand, within GFF6680at 56.150 kb on + strand, within GFF6680at 56.151 kb on - strand, within GFF6680at 56.151 kb on - strand, within GFF6680at 56.151 kb on - strand, within GFF6680at 56.176 kb on + strand, within GFF6680at 56.177 kb on - strand, within GFF6680at 56.177 kb on - strand, within GFF6680at 56.350 kb on + strand, within GFF6680at 56.350 kb on + strand, within GFF6680at 56.350 kb on + strand, within GFF6680at 56.350 kb on + strand, within GFF6680at 56.350 kb on + strand, within GFF6680at 56.351 kb on - strand, within GFF6680at 56.351 kb on - strand, within GFF6680at 56.351 kb on - strand, within GFF6680at 56.351 kb on - strand, within GFF6680at 56.351 kb on - strand, within GFF6680at 56.538 kb on - strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.548 kb on + strandat 56.549 kb on - strandat 56.549 kb on - strandat 56.684 kb on + strandat 56.685 kb on - strandat 56.741 kb on + strandat 56.741 kb on + strandat 56.741 kb on + strandat 56.742 kb on - strandat 56.742 kb on - strandat 56.837 kb on + strand, within GFF6681at 56.838 kb on - strand, within GFF6681at 56.838 kb on - strand, within GFF6681at 56.838 kb on - strand, within GFF6681at 56.838 kb on - strand, within GFF6681at 56.864 kb on + strand, within GFF6681at 56.865 kb on - strand, within GFF6681at 56.865 kb on - strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.926 kb on + strand, within GFF6681at 56.927 kb on - strand, within GFF6681at 56.927 kb on - strand, within GFF6681at 56.927 kb on - strand, within GFF6681at 57.116 kb on + strand, within GFF6681at 57.116 kb on + strand, within GFF6681at 57.116 kb on + strand, within GFF6681at 57.117 kb on - strand, within GFF6681at 57.260 kb on + strand, within GFF6681at 57.260 kb on + strand, within GFF6681at 57.260 kb on + strand, within GFF6681at 57.260 kb on + strand, within GFF6681at 57.261 kb on - strand, within GFF6681at 57.261 kb on - strand, within GFF6681at 57.261 kb on - strand, within GFF6681at 57.261 kb on - strand, within GFF6681at 57.269 kb on + strand, within GFF6681at 57.269 kb on + strand, within GFF6681at 57.269 kb on + strand, within GFF6681at 57.269 kb on + strand, within GFF6681at 57.270 kb on - strand, within GFF6681at 57.270 kb on - strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.296 kb on + strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.297 kb on - strand, within GFF6681at 57.329 kb on + strand, within GFF6681at 57.329 kb on + strand, within GFF6681at 57.329 kb on + strand, within GFF6681at 57.330 kb on - strand, within GFF6681at 57.330 kb on - strand, within GFF6681at 57.330 kb on - strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.350 kb on + strand, within GFF6681at 57.351 kb on - strand, within GFF6681at 57.351 kb on - strand, within GFF6681at 57.351 kb on - strand, within GFF6681at 57.351 kb on - strand, within GFF6681at 57.351 kb on - strand, within GFF6681

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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54,034 + GFF6678 0.72 -1.0
54,034 + GFF6678 0.72 +0.2
54,034 + GFF6678 0.72 +0.2
54,034 + GFF6678 0.72 -1.7
54,034 + GFF6678 0.72 +0.3
54,034 + GFF6678 0.72 +0.4
54,034 + GFF6678 0.72 -0.8
54,035 - GFF6678 0.72 +0.7
54,035 - GFF6678 0.72 -1.2
54,035 - GFF6678 0.72 -0.7
54,035 - GFF6678 0.72 -0.1
54,035 - GFF6678 0.72 -0.8
54,067 + GFF6678 0.74 +0.1
54,079 + GFF6678 0.75 -0.9
54,079 + GFF6678 0.75 -0.6
54,079 + GFF6678 0.75 +0.3
54,079 + GFF6678 0.75 +0.2
54,079 + GFF6678 0.75 -0.8
54,079 + GFF6678 0.75 +0.9
54,079 + GFF6678 0.75 -0.2
54,080 - GFF6678 0.75 -0.3
54,080 - GFF6678 0.75 -1.4
54,080 - GFF6678 0.75 -0.7
54,127 + GFF6678 0.79 -0.4
54,128 - GFF6678 0.79 -1.6
54,136 + GFF6678 0.80 +0.0
54,136 + GFF6678 0.80 +0.0
54,136 + GFF6678 0.80 +1.0
54,136 + GFF6678 0.80 -0.6
54,136 + GFF6678 0.80 +0.2
54,136 + GFF6678 0.80 -0.0
54,136 + GFF6678 0.80 -1.1
54,136 + GFF6678 0.80 -0.6
54,136 + GFF6678 0.80 -0.9
54,136 + GFF6678 0.80 -2.1
54,136 + GFF6678 0.80 +0.3
54,136 + GFF6678 0.80 +0.2
54,136 + GFF6678 0.80 -0.6
54,136 + GFF6678 0.80 -1.0
54,137 - GFF6678 0.80 +0.3
54,137 - GFF6678 0.80 -0.0
54,137 - GFF6678 0.80 +0.1
54,137 - GFF6678 0.80 +0.7
54,137 - GFF6678 0.80 +0.2
54,137 - GFF6678 0.80 -0.4
54,137 - GFF6678 0.80 +0.4
54,137 - GFF6678 0.80 +0.1
54,137 - GFF6678 0.80 -0.8
54,137 - GFF6678 0.80 +0.2
54,137 - GFF6678 0.80 -0.3
54,137 - GFF6678 0.80 -0.4
54,137 - GFF6678 0.80 -1.4
54,405 + -0.7
54,405 + -0.0
54,405 + -0.4
54,405 + +1.2
54,405 + +0.3
54,405 + -0.1
54,405 + -1.1
54,406 - +0.2
54,406 - -0.2
54,406 - +0.7
54,406 - +0.7
54,406 - +0.2
54,606 + +0.8
54,607 - +1.6
54,755 + GFF6679 0.58 +0.4
54,776 + GFF6679 0.65 -0.4
54,776 + GFF6679 0.65 +0.1
54,776 + GFF6679 0.65 -0.5
54,776 + GFF6679 0.65 -0.7
54,776 + GFF6679 0.65 +0.4
54,777 + GFF6679 0.66 -0.0
54,872 + -0.1
54,873 - +0.0
54,897 + -1.6
54,897 + -0.0
54,897 + -0.8
54,898 - -0.4
54,898 - -0.7
54,898 - -0.8
55,633 + GFF6680 0.42 -0.4
55,633 + GFF6680 0.42 -0.3
55,633 + GFF6680 0.42 -0.3
55,633 + GFF6680 0.42 +1.6
55,633 + GFF6680 0.42 -0.3
55,633 + GFF6680 0.42 -0.2
55,633 + GFF6680 0.42 -0.2
55,634 - GFF6680 0.42 -0.4
56,150 + GFF6680 0.73 -0.9
56,151 - GFF6680 0.73 -0.8
56,151 - GFF6680 0.73 -0.3
56,151 - GFF6680 0.73 -1.4
56,176 + GFF6680 0.75 +0.3
56,177 - GFF6680 0.75 +1.6
56,177 - GFF6680 0.75 +0.3
56,350 + GFF6680 0.85 -0.9
56,350 + GFF6680 0.85 -0.1
56,350 + GFF6680 0.85 -0.5
56,350 + GFF6680 0.85 -0.2
56,350 + GFF6680 0.85 +0.2
56,351 - GFF6680 0.85 +0.6
56,351 - GFF6680 0.85 -0.0
56,351 - GFF6680 0.85 -1.4
56,351 - GFF6680 0.85 -1.3
56,351 - GFF6680 0.85 +0.4
56,538 - -0.8
56,548 + -0.5
56,548 + -1.4
56,548 + -1.3
56,548 + -0.3
56,548 + +0.2
56,548 + +0.4
56,548 + -0.2
56,549 - -0.6
56,549 - -0.1
56,684 + -0.2
56,685 - -0.5
56,741 + -1.0
56,741 + +0.2
56,741 + +0.3
56,742 - -0.3
56,742 - -0.7
56,837 + GFF6681 0.11 +0.1
56,838 - GFF6681 0.11 -0.0
56,838 - GFF6681 0.11 -0.5
56,838 - GFF6681 0.11 -0.3
56,838 - GFF6681 0.11 +0.4
56,864 + GFF6681 0.12 -0.4
56,865 - GFF6681 0.12 -1.6
56,865 - GFF6681 0.12 -0.1
56,926 + GFF6681 0.15 -0.8
56,926 + GFF6681 0.15 -0.1
56,926 + GFF6681 0.15 -0.6
56,926 + GFF6681 0.15 -0.1
56,926 + GFF6681 0.15 -0.7
56,926 + GFF6681 0.15 -0.2
56,927 - GFF6681 0.15 -1.4
56,927 - GFF6681 0.15 +1.0
56,927 - GFF6681 0.15 +0.4
57,116 + GFF6681 0.24 -1.4
57,116 + GFF6681 0.24 -0.4
57,116 + GFF6681 0.24 -0.4
57,117 - GFF6681 0.24 +3.4
57,260 + GFF6681 0.30 +0.2
57,260 + GFF6681 0.30 -0.6
57,260 + GFF6681 0.30 -1.5
57,260 + GFF6681 0.30 +0.3
57,261 - GFF6681 0.30 +0.1
57,261 - GFF6681 0.30 -1.0
57,261 - GFF6681 0.30 -0.7
57,261 - GFF6681 0.30 -1.1
57,269 + GFF6681 0.31 +1.6
57,269 + GFF6681 0.31 +0.1
57,269 + GFF6681 0.31 -1.4
57,269 + GFF6681 0.31 -0.3
57,270 - GFF6681 0.31 -0.4
57,270 - GFF6681 0.31 -0.7
57,296 + GFF6681 0.32 +0.9
57,296 + GFF6681 0.32 +1.3
57,296 + GFF6681 0.32 -0.2
57,296 + GFF6681 0.32 -0.4
57,296 + GFF6681 0.32 -0.5
57,296 + GFF6681 0.32 +1.0
57,296 + GFF6681 0.32 -1.0
57,296 + GFF6681 0.32 -0.1
57,296 + GFF6681 0.32 -0.0
57,297 - GFF6681 0.32 -0.3
57,297 - GFF6681 0.32 -0.4
57,297 - GFF6681 0.32 +0.1
57,297 - GFF6681 0.32 +0.1
57,297 - GFF6681 0.32 -0.4
57,297 - GFF6681 0.32 +0.4
57,329 + GFF6681 0.33 +0.2
57,329 + GFF6681 0.33 -1.4
57,329 + GFF6681 0.33 +0.6
57,330 - GFF6681 0.34 -1.1
57,330 - GFF6681 0.34 -0.5
57,330 - GFF6681 0.34 +1.4
57,350 + GFF6681 0.34 -1.0
57,350 + GFF6681 0.34 -0.1
57,350 + GFF6681 0.34 -0.3
57,350 + GFF6681 0.34 -0.8
57,350 + GFF6681 0.34 +0.8
57,350 + GFF6681 0.34 +0.4
57,351 - GFF6681 0.34 -1.0
57,351 - GFF6681 0.34 -0.3
57,351 - GFF6681 0.34 -1.1
57,351 - GFF6681 0.34 -0.6
57,351 - GFF6681 0.34 +0.4

Or see this region's nucleotide sequence