Strain Fitness in Variovorax sp. SCN45 around GFF6608

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6606 and GFF6607 are separated by 26 nucleotidesGFF6607 and GFF6608 are separated by 26 nucleotidesGFF6608 and GFF6609 are separated by 83 nucleotides GFF6606 - no description, at 51,170 to 51,397 GFF6606 GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 GFF6608 - hypothetical protein, at 52,317 to 52,598 GFF6608 GFF6609 - FIG00957806: hypothetical protein, at 52,682 to 53,434 GFF6609 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.345 kb on + strand, within GFF6606at 51.393 kb on - strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.665 kb on + strand, within GFF6607at 51.666 kb on - strand, within GFF6607at 51.702 kb on - strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.924 kb on - strand, within GFF6607at 51.939 kb on + strand, within GFF6607at 51.940 kb on - strand, within GFF6607at 52.354 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.534 kb on + strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.613 kb on + strandat 52.613 kb on + strandat 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.182 kb on - strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.343 kb on + strand, within GFF6609at 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.382 kb on + strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.383 kb on - strandat 53.388 kb on + strandat 53.388 kb on + strandat 53.389 kb on - strandat 53.404 kb on - strandat 53.487 kb on - strandat 53.487 kb on - strandat 53.499 kb on + strandat 53.500 kb on - strandat 53.523 kb on - strandat 53.523 kb on - strandat 53.552 kb on - strandat 53.560 kb on + strandat 53.560 kb on + strandat 53.582 kb on + strandat 53.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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51,345 + GFF6606 0.77 -0.2
51,393 - -1.2
51,454 + -1.2
51,454 + -0.2
51,454 + +0.2
51,454 + +1.6
51,454 + -0.2
51,454 + +0.5
51,454 + -0.8
51,455 - -0.2
51,455 - -1.0
51,455 - +1.1
51,455 - -0.4
51,665 + GFF6607 0.28 -0.7
51,666 - GFF6607 0.28 -0.6
51,702 - GFF6607 0.32 -0.8
51,749 + GFF6607 0.37 -0.4
51,749 + GFF6607 0.37 -1.9
51,749 + GFF6607 0.37 +0.6
51,749 + GFF6607 0.37 +0.2
51,750 - GFF6607 0.38 +0.1
51,750 - GFF6607 0.38 +0.3
51,750 - GFF6607 0.38 +0.1
51,750 - GFF6607 0.38 +0.2
51,924 - GFF6607 0.58 -0.3
51,939 + GFF6607 0.59 -0.7
51,940 - GFF6607 0.60 +1.6
52,354 + GFF6608 0.13 -0.7
52,420 + GFF6608 0.37 +0.1
52,420 + GFF6608 0.37 -0.1
52,420 + GFF6608 0.37 -0.4
52,420 + GFF6608 0.37 -0.7
52,420 + GFF6608 0.37 -0.4
52,421 - GFF6608 0.37 +1.0
52,421 - GFF6608 0.37 -0.4
52,421 - GFF6608 0.37 -0.1
52,421 - GFF6608 0.37 -0.4
52,507 + GFF6608 0.67 +0.1
52,507 + GFF6608 0.67 -0.2
52,507 + GFF6608 0.67 -2.0
52,534 + GFF6608 0.77 -0.3
52,535 - GFF6608 0.77 -1.7
52,535 - GFF6608 0.77 +0.6
52,535 - GFF6608 0.77 -1.6
52,535 - GFF6608 0.77 +0.3
52,613 + -0.7
52,613 + +0.2
53,010 + GFF6609 0.44 -0.5
53,010 + GFF6609 0.44 +0.4
53,010 + GFF6609 0.44 -0.4
53,011 - GFF6609 0.44 -0.4
53,011 - GFF6609 0.44 +0.9
53,011 - GFF6609 0.44 +0.1
53,182 - GFF6609 0.66 +0.5
53,343 + GFF6609 0.88 -0.4
53,343 + GFF6609 0.88 -0.1
53,343 + GFF6609 0.88 +0.0
53,382 + -0.3
53,382 + +0.7
53,382 + +0.0
53,382 + -0.8
53,382 + +0.1
53,382 + -0.6
53,383 - -0.2
53,383 - -0.4
53,383 - +0.2
53,383 - -0.1
53,383 - -0.4
53,383 - -0.9
53,383 - -0.6
53,388 + -0.3
53,388 + +0.8
53,389 - +0.6
53,404 - -0.2
53,487 - +0.5
53,487 - -0.3
53,499 + +0.3
53,500 - -0.6
53,523 - -0.5
53,523 - +0.5
53,552 - -1.3
53,560 + +0.8
53,560 + +0.7
53,582 + -0.4
53,583 - +0.6

Or see this region's nucleotide sequence