Strain Fitness in Variovorax sp. SCN45 around GFF6606

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6603 and GFF6604 overlap by 4 nucleotidesGFF6604 and GFF6605 overlap by 4 nucleotidesGFF6605 and GFF6606 overlap by 4 nucleotidesGFF6606 and GFF6607 are separated by 26 nucleotidesGFF6607 and GFF6608 are separated by 26 nucleotides GFF6603 - Glycosidases, at 49,724 to 50,269 GFF6603 GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538 GFF6604 GFF6605 - ParA-like protein, at 50,535 to 51,173 GFF6605 GFF6606 - no description, at 51,170 to 51,397 GFF6606 GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 GFF6608 - hypothetical protein, at 52,317 to 52,598 GFF6608 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.414 kb on + strand, within GFF6604at 51.259 kb on + strand, within GFF6606at 51.259 kb on + strand, within GFF6606at 51.262 kb on + strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.272 kb on - strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.289 kb on + strand, within GFF6606at 51.290 kb on - strand, within GFF6606at 51.292 kb on - strand, within GFF6606at 51.315 kb on - strand, within GFF6606at 51.345 kb on + strand, within GFF6606at 51.393 kb on - strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.665 kb on + strand, within GFF6607at 51.666 kb on - strand, within GFF6607at 51.702 kb on - strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.924 kb on - strand, within GFF6607at 51.939 kb on + strand, within GFF6607at 51.940 kb on - strand, within GFF6607at 52.354 kb on + strand, within GFF6608

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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50,414 + GFF6604 0.54 -0.4
51,259 + GFF6606 0.39 -1.0
51,259 + GFF6606 0.39 -1.5
51,262 + GFF6606 0.40 -0.7
51,263 - GFF6606 0.41 +0.0
51,263 - GFF6606 0.41 -0.3
51,263 - GFF6606 0.41 -2.0
51,263 - GFF6606 0.41 +0.5
51,266 + GFF6606 0.42 -0.4
51,266 + GFF6606 0.42 -0.4
51,266 + GFF6606 0.42 +0.8
51,267 - GFF6606 0.43 +1.1
51,267 - GFF6606 0.43 +3.6
51,267 - GFF6606 0.43 -0.0
51,267 - GFF6606 0.43 -0.2
51,267 - GFF6606 0.43 -0.2
51,267 - GFF6606 0.43 -0.3
51,271 + GFF6606 0.44 -0.4
51,271 + GFF6606 0.44 -0.6
51,271 + GFF6606 0.44 -0.5
51,271 + GFF6606 0.44 -1.2
51,272 - GFF6606 0.45 -0.6
51,275 + GFF6606 0.46 +0.3
51,275 + GFF6606 0.46 -0.5
51,276 - GFF6606 0.46 +0.0
51,276 - GFF6606 0.46 +0.1
51,281 + GFF6606 0.49 -0.7
51,281 + GFF6606 0.49 -0.8
51,282 - GFF6606 0.49 -0.6
51,282 - GFF6606 0.49 +0.3
51,284 + GFF6606 0.50 +0.0
51,284 + GFF6606 0.50 -0.7
51,284 + GFF6606 0.50 -0.9
51,284 + GFF6606 0.50 -0.3
51,284 + GFF6606 0.50 -0.2
51,285 - GFF6606 0.50 -1.0
51,285 - GFF6606 0.50 -0.8
51,285 - GFF6606 0.50 -1.4
51,285 - GFF6606 0.50 -0.3
51,285 - GFF6606 0.50 +0.3
51,285 - GFF6606 0.50 -0.5
51,289 + GFF6606 0.52 +0.3
51,290 - GFF6606 0.53 +0.2
51,292 - GFF6606 0.54 +0.1
51,315 - GFF6606 0.64 -1.0
51,345 + GFF6606 0.77 -0.2
51,393 - -1.2
51,454 + -1.2
51,454 + -0.2
51,454 + +0.2
51,454 + +1.6
51,454 + -0.2
51,454 + +0.5
51,454 + -0.8
51,455 - -0.2
51,455 - -1.0
51,455 - +1.1
51,455 - -0.4
51,665 + GFF6607 0.28 -0.7
51,666 - GFF6607 0.28 -0.6
51,702 - GFF6607 0.32 -0.8
51,749 + GFF6607 0.37 -0.4
51,749 + GFF6607 0.37 -1.9
51,749 + GFF6607 0.37 +0.6
51,749 + GFF6607 0.37 +0.2
51,750 - GFF6607 0.38 +0.1
51,750 - GFF6607 0.38 +0.3
51,750 - GFF6607 0.38 +0.1
51,750 - GFF6607 0.38 +0.2
51,924 - GFF6607 0.58 -0.3
51,939 + GFF6607 0.59 -0.7
51,940 - GFF6607 0.60 +1.6
52,354 + GFF6608 0.13 -0.7

Or see this region's nucleotide sequence