Strain Fitness in Variovorax sp. SCN45 around GFF655

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF653 and GFF654 are separated by 156 nucleotidesGFF654 and GFF655 are separated by 18 nucleotidesGFF655 and GFF656 are separated by 14 nucleotides GFF653 - no description, at 704,902 to 705,318 GFF653 GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236 GFF654 GFF655 - hypothetical protein, at 706,255 to 706,674 GFF655 GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935 GFF656 Position (kb) 706 707Strain fitness (log2 ratio) -2 -1 0 1 2at 705.357 kb on + strandat 705.357 kb on + strandat 705.358 kb on - strandat 705.397 kb on + strandat 705.397 kb on + strandat 705.397 kb on + strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.398 kb on - strandat 705.413 kb on + strandat 705.413 kb on + strandat 705.413 kb on + strandat 705.414 kb on - strandat 705.414 kb on - strandat 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.814 kb on + strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.901 kb on + strand, within GFF654at 705.901 kb on + strand, within GFF654at 706.243 kb on + strandat 706.265 kb on + strandat 706.265 kb on + strandat 706.266 kb on - strandat 706.289 kb on + strandat 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.562 kb on + strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.699 kb on + strandat 706.747 kb on + strandat 706.748 kb on - strandat 706.856 kb on - strandat 706.984 kb on + strand, within GFF656at 706.984 kb on + strand, within GFF656at 706.985 kb on - strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.341 kb on + strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.354 kb on - strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.393 kb on - strand, within GFF656at 707.431 kb on + strand, within GFF656at 707.432 kb on - strand, within GFF656at 707.548 kb on + strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.566 kb on + strand, within GFF656

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
705,357 + +1.2
705,357 + -0.1
705,358 - +1.0
705,397 + -0.4
705,397 + -0.2
705,397 + -0.3
705,398 - -0.6
705,398 - +1.3
705,398 - +0.5
705,398 - +1.5
705,398 - -0.0
705,398 - +1.2
705,413 + -0.4
705,413 + -0.5
705,413 + +0.0
705,414 - +0.0
705,414 - -0.1
705,793 + GFF654 0.42 +1.5
705,793 + GFF654 0.42 -0.7
705,793 + GFF654 0.42 +0.5
705,793 + GFF654 0.42 +1.2
705,794 - GFF654 0.42 -0.2
705,794 - GFF654 0.42 -0.3
705,794 - GFF654 0.42 -0.7
705,794 - GFF654 0.42 -0.2
705,814 + GFF654 0.44 +0.1
705,815 - GFF654 0.45 +0.2
705,815 - GFF654 0.45 +2.2
705,815 - GFF654 0.45 +0.6
705,901 + GFF654 0.56 -0.7
705,901 + GFF654 0.56 +0.1
706,243 + +1.5
706,265 + -0.2
706,265 + -0.3
706,266 - +0.3
706,289 + -0.1
706,500 - GFF655 0.58 -0.1
706,500 - GFF655 0.58 -1.2
706,500 - GFF655 0.58 -1.1
706,562 + GFF655 0.73 +0.4
706,563 - GFF655 0.73 +0.4
706,563 - GFF655 0.73 -0.1
706,563 - GFF655 0.73 +0.3
706,563 - GFF655 0.73 -0.4
706,699 + +0.5
706,747 + -1.2
706,748 - -1.1
706,856 - +1.0
706,984 + GFF656 0.13 -0.1
706,984 + GFF656 0.13 +0.9
706,985 - GFF656 0.13 -0.8
706,996 + GFF656 0.14 -0.3
706,996 + GFF656 0.14 -0.9
706,996 + GFF656 0.14 -0.1
706,997 - GFF656 0.14 -0.7
706,997 - GFF656 0.14 +1.5
706,997 - GFF656 0.14 +0.3
706,997 - GFF656 0.14 -0.4
706,999 + GFF656 0.14 -1.5
706,999 + GFF656 0.14 +0.0
706,999 + GFF656 0.14 -0.1
706,999 + GFF656 0.14 +0.8
707,000 - GFF656 0.14 +0.5
707,000 - GFF656 0.14 +0.6
707,000 - GFF656 0.14 +1.7
707,188 + GFF656 0.22 +0.1
707,188 + GFF656 0.22 -0.6
707,188 + GFF656 0.22 +0.8
707,188 + GFF656 0.22 -0.1
707,189 - GFF656 0.22 -1.4
707,189 - GFF656 0.22 -0.6
707,189 - GFF656 0.22 +1.8
707,189 - GFF656 0.22 -0.6
707,189 - GFF656 0.22 -0.3
707,341 + GFF656 0.29 +0.7
707,342 - GFF656 0.29 -0.1
707,342 - GFF656 0.29 -1.5
707,342 - GFF656 0.29 +1.5
707,342 - GFF656 0.29 -0.6
707,353 + GFF656 0.30 +0.6
707,353 + GFF656 0.30 +0.3
707,353 + GFF656 0.30 -0.5
707,354 - GFF656 0.30 +0.9
707,392 + GFF656 0.31 -0.6
707,392 + GFF656 0.31 -1.1
707,392 + GFF656 0.31 -0.5
707,393 - GFF656 0.31 -1.0
707,431 + GFF656 0.33 -2.5
707,432 - GFF656 0.33 +1.3
707,548 + GFF656 0.38 +0.1
707,549 - GFF656 0.38 +1.9
707,549 - GFF656 0.38 +0.1
707,549 - GFF656 0.38 -0.1
707,563 + GFF656 0.39 -0.3
707,563 + GFF656 0.39 -0.8
707,563 + GFF656 0.39 -0.8
707,563 + GFF656 0.39 -0.8
707,564 - GFF656 0.39 +0.5
707,564 - GFF656 0.39 -0.1
707,564 - GFF656 0.39 +1.5
707,564 - GFF656 0.39 -0.7
707,564 - GFF656 0.39 -0.3
707,564 - GFF656 0.39 +0.1
707,564 - GFF656 0.39 -0.4
707,566 + GFF656 0.39 +0.9

Or see this region's nucleotide sequence