Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6167 and GFF6168 are separated by 22 nucleotides GFF6168 and GFF6169 overlap by 4 nucleotides GFF6169 and GFF6170 overlap by 4 nucleotides GFF6170 and GFF6171 overlap by 4 nucleotides
GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426
GFF6167
GFF6168 - Na(+) H(+) antiporter subunit G, at 73,449 to 73,820
GFF6168
GFF6169 - Na(+) H(+) antiporter subunit F, at 73,817 to 74,095
GFF6169
GFF6170 - Na(+) H(+) antiporter subunit E, at 74,092 to 74,583
GFF6170
GFF6171 - Na(+) H(+) antiporter subunit D, at 74,580 to 76,298
GFF6171
Position (kb) 74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 73.145 kb on + strand, within GFF6167 at 73.145 kb on + strand, within GFF6167 at 73.322 kb on + strand, within GFF6167 at 73.323 kb on - strand, within GFF6167 at 73.361 kb on + strand at 73.362 kb on - strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.425 kb on - strand at 73.425 kb on - strand at 73.425 kb on - strand at 73.637 kb on - strand, within GFF6168 at 73.637 kb on - strand, within GFF6168 at 73.908 kb on + strand, within GFF6169 at 73.908 kb on + strand, within GFF6169 at 73.908 kb on + strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 74.294 kb on - strand, within GFF6170 at 74.378 kb on + strand, within GFF6170 at 74.378 kb on + strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.662 kb on + strand at 74.880 kb on + strand, within GFF6171 at 74.880 kb on + strand, within GFF6171 at 74.880 kb on + strand, within GFF6171 at 74.881 kb on - strand, within GFF6171 at 74.881 kb on - strand, within GFF6171 at 74.881 kb on - strand, within GFF6171 at 75.055 kb on + strand, within GFF6171 at 75.235 kb on + strand, within GFF6171 at 75.235 kb on + strand, within GFF6171 at 75.235 kb on + strand, within GFF6171 at 75.235 kb on + strand, within GFF6171 at 75.236 kb on - strand, within GFF6171 at 75.236 kb on - strand, within GFF6171 at 75.472 kb on + strand, within GFF6171 at 75.472 kb on + strand, within GFF6171 at 75.472 kb on + strand, within GFF6171 at 75.472 kb on + strand, within GFF6171 at 75.473 kb on - strand, within GFF6171 at 75.473 kb on - strand, within GFF6171 at 75.473 kb on - strand, within GFF6171 at 75.473 kb on - strand, within GFF6171 at 75.473 kb on - strand, within GFF6171 at 75.532 kb on + strand, within GFF6171 at 75.532 kb on + strand, within GFF6171 at 75.532 kb on + strand, within GFF6171
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 73,145 + GFF6167 0.72 -0.2 73,145 + GFF6167 0.72 +0.3 73,322 + GFF6167 0.90 -0.1 73,323 - GFF6167 0.90 -0.2 73,361 + -0.2 73,362 - -0.2 73,424 + -0.1 73,424 + -0.2 73,424 + -0.4 73,424 + -0.3 73,424 + -0.5 73,424 + -0.8 73,424 + -0.2 73,424 + -0.6 73,424 + -0.7 73,424 + -0.9 73,424 + +0.0 73,425 - +0.6 73,425 - -0.4 73,425 - -0.0 73,637 - GFF6168 0.51 +0.5 73,637 - GFF6168 0.51 +0.4 73,908 + GFF6169 0.33 +0.3 73,908 + GFF6169 0.33 -0.6 73,908 + GFF6169 0.33 +0.3 73,909 - GFF6169 0.33 +0.0 73,909 - GFF6169 0.33 +0.3 73,909 - GFF6169 0.33 -0.9 73,909 - GFF6169 0.33 -0.0 73,909 - GFF6169 0.33 -0.4 73,909 - GFF6169 0.33 +0.4 73,965 + GFF6169 0.53 -0.7 73,965 + GFF6169 0.53 -0.1 73,965 + GFF6169 0.53 +0.1 73,965 + GFF6169 0.53 -1.0 73,965 + GFF6169 0.53 -0.4 73,965 + GFF6169 0.53 -0.4 73,965 + GFF6169 0.53 +0.8 73,965 + GFF6169 0.53 +1.0 73,965 + GFF6169 0.53 +0.0 73,966 - GFF6169 0.53 +0.9 73,966 - GFF6169 0.53 -1.2 73,966 - GFF6169 0.53 -0.8 73,966 - GFF6169 0.53 -1.6 74,294 - GFF6170 0.41 +0.1 74,378 + GFF6170 0.58 +0.1 74,378 + GFF6170 0.58 -0.0 74,379 - GFF6170 0.58 +0.4 74,379 - GFF6170 0.58 +0.7 74,379 - GFF6170 0.58 +0.1 74,379 - GFF6170 0.58 -0.0 74,379 - GFF6170 0.58 +0.2 74,662 + +0.3 74,880 + GFF6171 0.17 +0.0 74,880 + GFF6171 0.17 +0.2 74,880 + GFF6171 0.17 -0.4 74,881 - GFF6171 0.18 -1.2 74,881 - GFF6171 0.18 -0.2 74,881 - GFF6171 0.18 +0.0 75,055 + GFF6171 0.28 -0.0 75,235 + GFF6171 0.38 +0.4 75,235 + GFF6171 0.38 -0.2 75,235 + GFF6171 0.38 -0.5 75,235 + GFF6171 0.38 +0.4 75,236 - GFF6171 0.38 +1.6 75,236 - GFF6171 0.38 -0.4 75,472 + GFF6171 0.52 +0.2 75,472 + GFF6171 0.52 -0.4 75,472 + GFF6171 0.52 -0.6 75,472 + GFF6171 0.52 -0.7 75,473 - GFF6171 0.52 -0.2 75,473 - GFF6171 0.52 -0.3 75,473 - GFF6171 0.52 +0.5 75,473 - GFF6171 0.52 -1.8 75,473 - GFF6171 0.52 -1.0 75,532 + GFF6171 0.55 -0.7 75,532 + GFF6171 0.55 -0.9 75,532 + GFF6171 0.55 -0.6
Or see this region's nucleotide sequence