Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6141 and GFF6142 are separated by 41 nucleotides GFF6142 and GFF6143 overlap by 4 nucleotides
GFF6141 - 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37), at 44,118 to 45,248
GFF6141
GFF6142 - 2-aminoethylphosphonate ABC transporter permease protein, at 45,290 to 47,023
GFF6142
GFF6143 - 2-aminoethylphosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 47,020 to 48,156
GFF6143
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 44.299 kb on + strand, within GFF6141 at 44.300 kb on - strand, within GFF6141 at 44.317 kb on + strand, within GFF6141 at 44.317 kb on + strand, within GFF6141 at 44.437 kb on + strand, within GFF6141 at 44.476 kb on + strand, within GFF6141 at 44.476 kb on + strand, within GFF6141 at 44.477 kb on - strand, within GFF6141 at 44.477 kb on - strand, within GFF6141 at 44.554 kb on + strand, within GFF6141 at 44.554 kb on + strand, within GFF6141 at 44.554 kb on + strand, within GFF6141 at 44.554 kb on + strand, within GFF6141 at 44.555 kb on - strand, within GFF6141 at 44.555 kb on - strand, within GFF6141 at 44.555 kb on - strand, within GFF6141 at 44.555 kb on - strand, within GFF6141 at 44.570 kb on - strand, within GFF6141 at 44.915 kb on - strand, within GFF6141 at 44.915 kb on - strand, within GFF6141 at 44.975 kb on - strand, within GFF6141 at 45.477 kb on + strand, within GFF6142 at 45.525 kb on + strand, within GFF6142 at 45.525 kb on + strand, within GFF6142 at 45.678 kb on + strand, within GFF6142 at 45.679 kb on - strand, within GFF6142 at 45.679 kb on - strand, within GFF6142 at 45.679 kb on - strand, within GFF6142 at 45.681 kb on + strand, within GFF6142 at 45.681 kb on + strand, within GFF6142 at 45.682 kb on - strand, within GFF6142 at 45.682 kb on - strand, within GFF6142 at 45.871 kb on - strand, within GFF6142 at 46.006 kb on - strand, within GFF6142 at 46.032 kb on + strand, within GFF6142 at 46.129 kb on - strand, within GFF6142 at 46.179 kb on + strand, within GFF6142 at 46.180 kb on - strand, within GFF6142 at 46.341 kb on + strand, within GFF6142 at 46.341 kb on + strand, within GFF6142 at 46.342 kb on - strand, within GFF6142 at 46.377 kb on + strand, within GFF6142 at 46.450 kb on - strand, within GFF6142 at 46.515 kb on + strand, within GFF6142 at 46.548 kb on + strand, within GFF6142 at 46.548 kb on + strand, within GFF6142 at 46.549 kb on - strand, within GFF6142 at 46.711 kb on - strand, within GFF6142 at 46.809 kb on + strand, within GFF6142 at 46.810 kb on - strand, within GFF6142 at 47.282 kb on + strand, within GFF6143 at 47.441 kb on + strand, within GFF6143 at 47.441 kb on + strand, within GFF6143 at 47.442 kb on - strand, within GFF6143 at 47.717 kb on + strand, within GFF6143 at 47.718 kb on - strand, within GFF6143 at 47.718 kb on - strand, within GFF6143 at 47.855 kb on + strand, within GFF6143 at 47.855 kb on + strand, within GFF6143
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 44,299 + GFF6141 0.16 +0.9 44,300 - GFF6141 0.16 -0.4 44,317 + GFF6141 0.18 -1.0 44,317 + GFF6141 0.18 -0.7 44,437 + GFF6141 0.28 +0.6 44,476 + GFF6141 0.32 -0.4 44,476 + GFF6141 0.32 -1.0 44,477 - GFF6141 0.32 -0.3 44,477 - GFF6141 0.32 -1.0 44,554 + GFF6141 0.39 -0.1 44,554 + GFF6141 0.39 -0.4 44,554 + GFF6141 0.39 -1.1 44,554 + GFF6141 0.39 -0.2 44,555 - GFF6141 0.39 +0.9 44,555 - GFF6141 0.39 -0.7 44,555 - GFF6141 0.39 +0.3 44,555 - GFF6141 0.39 +0.3 44,570 - GFF6141 0.40 -1.2 44,915 - GFF6141 0.70 -0.1 44,915 - GFF6141 0.70 -0.1 44,975 - GFF6141 0.76 +0.4 45,477 + GFF6142 0.11 -0.7 45,525 + GFF6142 0.14 +0.0 45,525 + GFF6142 0.14 -0.5 45,678 + GFF6142 0.22 -0.9 45,679 - GFF6142 0.22 -0.5 45,679 - GFF6142 0.22 +0.2 45,679 - GFF6142 0.22 +0.3 45,681 + GFF6142 0.23 -0.0 45,681 + GFF6142 0.23 +0.1 45,682 - GFF6142 0.23 -0.7 45,682 - GFF6142 0.23 +0.6 45,871 - GFF6142 0.34 +0.6 46,006 - GFF6142 0.41 -0.5 46,032 + GFF6142 0.43 -2.1 46,129 - GFF6142 0.48 +0.6 46,179 + GFF6142 0.51 -0.6 46,180 - GFF6142 0.51 +0.5 46,341 + GFF6142 0.61 -0.0 46,341 + GFF6142 0.61 -0.3 46,342 - GFF6142 0.61 -0.1 46,377 + GFF6142 0.63 -1.1 46,450 - GFF6142 0.67 -0.4 46,515 + GFF6142 0.71 -0.4 46,548 + GFF6142 0.73 -2.1 46,548 + GFF6142 0.73 -0.9 46,549 - GFF6142 0.73 +0.1 46,711 - GFF6142 0.82 -1.4 46,809 + GFF6142 0.88 -0.4 46,810 - GFF6142 0.88 -0.4 47,282 + GFF6143 0.23 -0.7 47,441 + GFF6143 0.37 +0.6 47,441 + GFF6143 0.37 +0.3 47,442 - GFF6143 0.37 +3.2 47,717 + GFF6143 0.61 -0.1 47,718 - GFF6143 0.61 -0.2 47,718 - GFF6143 0.61 -0.9 47,855 + GFF6143 0.73 -0.5 47,855 + GFF6143 0.73 +0.6
Or see this region's nucleotide sequence