Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6062 and GFF6063 are separated by 22 nucleotides GFF6063 and GFF6064 are separated by 70 nucleotides GFF6064 and GFF6065 overlap by 47 nucleotides
GFF6062 - Sodium-dependent phosphate transporter, at 123,533 to 125,194
GFF6062
GFF6063 - Sodium/bile acid symporter family, at 125,217 to 126,221
GFF6063
GFF6064 - Transcriptional regulator YfeR, LysR family, at 126,292 to 127,221
GFF6064
GFF6065 - Two-component transcriptional response regulator receiver domain, at 127,175 to 127,600
GFF6065
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.319 kb on + strand, within GFF6062 at 124.319 kb on + strand, within GFF6062 at 124.319 kb on + strand, within GFF6062 at 124.319 kb on + strand, within GFF6062 at 124.320 kb on - strand, within GFF6062 at 124.320 kb on - strand, within GFF6062 at 124.667 kb on + strand, within GFF6062 at 124.667 kb on + strand, within GFF6062 at 124.668 kb on - strand, within GFF6062 at 124.668 kb on - strand, within GFF6062 at 124.668 kb on - strand, within GFF6062 at 124.682 kb on + strand, within GFF6062 at 124.682 kb on + strand, within GFF6062 at 124.682 kb on + strand, within GFF6062 at 124.683 kb on - strand, within GFF6062 at 124.683 kb on - strand, within GFF6062 at 124.683 kb on - strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.685 kb on + strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 124.686 kb on - strand, within GFF6062 at 125.175 kb on + strand at 125.175 kb on + strand at 125.175 kb on + strand at 125.175 kb on + strand at 125.175 kb on + strand at 125.176 kb on - strand at 125.218 kb on + strand at 125.218 kb on + strand at 125.218 kb on + strand at 125.219 kb on - strand at 125.219 kb on - strand at 125.272 kb on + strand at 125.273 kb on - strand at 125.273 kb on - strand at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.587 kb on + strand, within GFF6063 at 125.588 kb on - strand, within GFF6063 at 125.588 kb on - strand, within GFF6063 at 125.588 kb on - strand, within GFF6063 at 125.588 kb on - strand, within GFF6063 at 125.588 kb on - strand, within GFF6063 at 125.737 kb on + strand, within GFF6063 at 125.923 kb on + strand, within GFF6063 at 125.923 kb on + strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 125.924 kb on - strand, within GFF6063 at 126.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 124,319 + GFF6062 0.47 -0.3 124,319 + GFF6062 0.47 -1.0 124,319 + GFF6062 0.47 +0.2 124,319 + GFF6062 0.47 +2.7 124,320 - GFF6062 0.47 -0.4 124,320 - GFF6062 0.47 -0.4 124,667 + GFF6062 0.68 +0.3 124,667 + GFF6062 0.68 -0.2 124,668 - GFF6062 0.68 +1.1 124,668 - GFF6062 0.68 -0.3 124,668 - GFF6062 0.68 -1.5 124,682 + GFF6062 0.69 +0.1 124,682 + GFF6062 0.69 +0.4 124,682 + GFF6062 0.69 +1.1 124,683 - GFF6062 0.69 +1.0 124,683 - GFF6062 0.69 +1.2 124,683 - GFF6062 0.69 -0.9 124,685 + GFF6062 0.69 -0.5 124,685 + GFF6062 0.69 +1.2 124,685 + GFF6062 0.69 -0.2 124,685 + GFF6062 0.69 -0.3 124,685 + GFF6062 0.69 -0.2 124,685 + GFF6062 0.69 +0.2 124,686 - GFF6062 0.69 -2.0 124,686 - GFF6062 0.69 +0.1 124,686 - GFF6062 0.69 -0.2 124,686 - GFF6062 0.69 -0.4 124,686 - GFF6062 0.69 +1.1 124,686 - GFF6062 0.69 +0.0 125,175 + +0.5 125,175 + -0.7 125,175 + +0.6 125,175 + +0.0 125,175 + -0.4 125,176 - +0.2 125,218 + +0.4 125,218 + -0.2 125,218 + +1.5 125,219 - -0.4 125,219 - -0.7 125,272 + -0.3 125,273 - -0.2 125,273 - +1.1 125,587 + GFF6063 0.37 +0.1 125,587 + GFF6063 0.37 +0.2 125,587 + GFF6063 0.37 +0.4 125,587 + GFF6063 0.37 +0.1 125,587 + GFF6063 0.37 -0.6 125,587 + GFF6063 0.37 -0.1 125,587 + GFF6063 0.37 -0.0 125,588 - GFF6063 0.37 +0.9 125,588 - GFF6063 0.37 -0.7 125,588 - GFF6063 0.37 -0.2 125,588 - GFF6063 0.37 +0.2 125,588 - GFF6063 0.37 -1.3 125,737 + GFF6063 0.52 -0.2 125,923 + GFF6063 0.70 +0.7 125,923 + GFF6063 0.70 -0.3 125,924 - GFF6063 0.70 -0.0 125,924 - GFF6063 0.70 +0.7 125,924 - GFF6063 0.70 +0.1 125,924 - GFF6063 0.70 +1.7 125,924 - GFF6063 0.70 +0.9 125,924 - GFF6063 0.70 -0.1 125,924 - GFF6063 0.70 +0.2 126,297 + +0.3
Or see this region's nucleotide sequence