Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5964 and GFF5965 are separated by 12 nucleotides GFF5965 and GFF5966 are separated by 186 nucleotides GFF5966 and GFF5967 are separated by 53 nucleotides
GFF5964 - Homoserine/homoserine lactone efflux protein, at 18,064 to 18,690
GFF5964
GFF5965 - hypothetical protein, at 18,703 to 18,912
GFF5965
GFF5966 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 19,099 to 21,348
GFF5966
GFF5967 - Beta-propeller domains of methanol dehydrogenase type, at 21,402 to 22,817
GFF5967
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.151 kb on + strand, within GFF5964 at 18.308 kb on - strand, within GFF5964 at 18.316 kb on + strand, within GFF5964 at 18.316 kb on + strand, within GFF5964 at 18.317 kb on - strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.412 kb on + strand, within GFF5964 at 18.413 kb on - strand, within GFF5964 at 18.413 kb on - strand, within GFF5964 at 18.559 kb on + strand, within GFF5964 at 18.701 kb on - strand at 18.720 kb on + strand at 18.738 kb on - strand, within GFF5965 at 18.777 kb on - strand, within GFF5965 at 18.842 kb on + strand, within GFF5965 at 18.842 kb on + strand, within GFF5965 at 18.889 kb on + strand, within GFF5965 at 18.889 kb on + strand, within GFF5965 at 19.073 kb on + strand at 19.073 kb on + strand at 19.073 kb on + strand at 19.073 kb on + strand at 19.073 kb on + strand at 19.073 kb on + strand at 19.073 kb on + strand at 19.074 kb on - strand at 19.074 kb on - strand at 19.074 kb on - strand at 19.074 kb on - strand at 19.074 kb on - strand at 19.597 kb on + strand, within GFF5966 at 19.598 kb on - strand, within GFF5966 at 20.197 kb on + strand, within GFF5966 at 20.284 kb on + strand, within GFF5966 at 20.284 kb on + strand, within GFF5966 at 20.284 kb on + strand, within GFF5966 at 20.284 kb on + strand, within GFF5966 at 20.285 kb on - strand, within GFF5966 at 20.299 kb on + strand, within GFF5966 at 20.300 kb on - strand, within GFF5966 at 20.300 kb on - strand, within GFF5966 at 20.452 kb on + strand, within GFF5966 at 20.452 kb on + strand, within GFF5966 at 20.452 kb on + strand, within GFF5966 at 20.453 kb on - strand, within GFF5966 at 20.455 kb on + strand, within GFF5966 at 20.456 kb on - strand, within GFF5966 at 20.543 kb on - strand, within GFF5966 at 21.534 kb on + strand at 21.535 kb on - strand at 22.296 kb on + strand, within GFF5967 at 22.296 kb on + strand, within GFF5967 at 22.297 kb on - strand, within GFF5967 at 22.297 kb on - strand, within GFF5967 at 22.308 kb on + strand, within GFF5967 at 22.338 kb on + strand, within GFF5967 at 22.338 kb on + strand, within GFF5967 at 22.338 kb on + strand, within GFF5967 at 22.338 kb on + strand, within GFF5967 at 22.338 kb on + strand, within GFF5967 at 22.339 kb on - strand, within GFF5967 at 22.339 kb on - strand, within GFF5967 at 22.339 kb on - strand, within GFF5967 at 22.339 kb on - strand, within GFF5967 at 22.339 kb on - strand, within GFF5967
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,151 + GFF5964 0.14 -0.4 18,151 + GFF5964 0.14 -0.2 18,151 + GFF5964 0.14 -0.4 18,151 + GFF5964 0.14 -0.7 18,151 + GFF5964 0.14 +0.5 18,151 + GFF5964 0.14 -0.7 18,308 - GFF5964 0.39 -0.5 18,316 + GFF5964 0.40 -0.4 18,316 + GFF5964 0.40 -0.3 18,317 - GFF5964 0.40 -0.5 18,412 + GFF5964 0.56 -0.2 18,412 + GFF5964 0.56 -0.3 18,412 + GFF5964 0.56 -0.9 18,413 - GFF5964 0.56 +0.4 18,413 - GFF5964 0.56 +0.1 18,559 + GFF5964 0.79 -1.3 18,701 - -0.2 18,720 + +0.7 18,738 - GFF5965 0.17 +0.8 18,777 - GFF5965 0.35 -0.7 18,842 + GFF5965 0.66 +0.3 18,842 + GFF5965 0.66 -0.3 18,889 + GFF5965 0.89 -0.3 18,889 + GFF5965 0.89 +1.4 19,073 + +0.1 19,073 + -0.1 19,073 + -0.8 19,073 + -0.1 19,073 + -0.1 19,073 + -0.3 19,073 + +0.0 19,074 - -0.3 19,074 - +1.2 19,074 - -0.7 19,074 - -0.4 19,074 - -2.3 19,597 + GFF5966 0.22 +0.3 19,598 - GFF5966 0.22 +0.4 20,197 + GFF5966 0.49 -0.2 20,284 + GFF5966 0.53 -0.2 20,284 + GFF5966 0.53 -1.1 20,284 + GFF5966 0.53 -0.7 20,284 + GFF5966 0.53 +0.6 20,285 - GFF5966 0.53 +0.2 20,299 + GFF5966 0.53 +0.0 20,300 - GFF5966 0.53 +0.1 20,300 - GFF5966 0.53 -0.3 20,452 + GFF5966 0.60 +0.7 20,452 + GFF5966 0.60 -1.1 20,452 + GFF5966 0.60 +0.9 20,453 - GFF5966 0.60 -0.5 20,455 + GFF5966 0.60 +0.5 20,456 - GFF5966 0.60 +0.5 20,543 - GFF5966 0.64 +0.7 21,534 + -0.2 21,535 - +0.7 22,296 + GFF5967 0.63 +0.8 22,296 + GFF5967 0.63 -0.3 22,297 - GFF5967 0.63 +0.3 22,297 - GFF5967 0.63 -0.2 22,308 + GFF5967 0.64 -0.3 22,338 + GFF5967 0.66 +0.3 22,338 + GFF5967 0.66 +1.4 22,338 + GFF5967 0.66 +1.7 22,338 + GFF5967 0.66 +1.2 22,338 + GFF5967 0.66 -0.4 22,339 - GFF5967 0.66 -0.6 22,339 - GFF5967 0.66 +0.3 22,339 - GFF5967 0.66 +0.3 22,339 - GFF5967 0.66 -0.4 22,339 - GFF5967 0.66 +0.1
Or see this region's nucleotide sequence