Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5809 and GFF5810 are separated by 4 nucleotides GFF5810 and GFF5811 overlap by 4 nucleotides
GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465
GFF5809
GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705
GFF5810
GFF5811 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like, at 187,702 to 190,872
GFF5811
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.516 kb on - strand, within GFF5809 at 185.575 kb on + strand, within GFF5809 at 185.609 kb on - strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.956 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.298 kb on + strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.686 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.915 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.254 kb on - strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 188.436 kb on - strand, within GFF5811 at 188.592 kb on + strand, within GFF5811 at 188.593 kb on - strand, within GFF5811
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 185,515 + GFF5809 0.36 +0.7 185,515 + GFF5809 0.36 -0.2 185,515 + GFF5809 0.36 -1.5 185,516 - GFF5809 0.36 +0.7 185,575 + GFF5809 0.40 -1.9 185,609 - GFF5809 0.43 +2.3 185,953 + GFF5809 0.66 -0.1 185,953 + GFF5809 0.66 -1.6 185,954 - GFF5809 0.66 -1.6 185,954 - GFF5809 0.66 -3.3 185,954 - GFF5809 0.66 +0.7 185,954 - GFF5809 0.66 -0.4 185,954 - GFF5809 0.66 +0.8 185,954 - GFF5809 0.66 -0.1 185,956 + GFF5809 0.66 -0.4 186,139 + GFF5809 0.78 -0.2 186,139 + GFF5809 0.78 +1.2 186,139 + GFF5809 0.78 -0.8 186,139 + GFF5809 0.78 +0.4 186,140 - GFF5809 0.78 -0.7 186,140 - GFF5809 0.78 +0.5 186,298 + GFF5809 0.89 -0.8 186,299 - GFF5809 0.89 +0.1 186,299 - GFF5809 0.89 +0.4 186,299 - GFF5809 0.89 -0.6 186,686 + GFF5810 0.17 -1.3 186,914 + GFF5810 0.36 +0.5 186,914 + GFF5810 0.36 -0.4 186,915 - GFF5810 0.36 -0.4 187,026 - GFF5810 0.45 -0.9 187,026 - GFF5810 0.45 -0.4 187,254 - GFF5810 0.63 -0.7 187,475 + GFF5810 0.81 -0.5 187,475 + GFF5810 0.81 -0.9 187,475 + GFF5810 0.81 +0.4 187,476 - GFF5810 0.81 -1.4 187,476 - GFF5810 0.81 -0.9 187,476 - GFF5810 0.81 +0.4 187,476 - GFF5810 0.81 +0.1 187,604 + +0.4 187,604 + +0.7 187,604 + -0.3 187,604 + -0.2 187,604 + -0.1 187,604 + -0.3 188,436 - GFF5811 0.23 +1.3 188,592 + GFF5811 0.28 +1.0 188,593 - GFF5811 0.28 +0.6
Or see this region's nucleotide sequence