Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5705 and GFF5706 are separated by 3 nucleotides GFF5706 and GFF5707 are separated by 146 nucleotides GFF5707 and GFF5708 are separated by 80 nucleotides
GFF5705 - Transcriptional regulator, AcrR family, at 79,456 to 80,031
GFF5705
GFF5706 - no description, at 80,035 to 80,187
GFF5706
GFF5707 - Transcriptional regulator, LysR family, at 80,334 to 81,191
GFF5707
GFF5708 - Pyridoxal phosphate-dependent aminotransferase, at 81,272 to 82,606
GFF5708
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.482 kb on - strand at 79.482 kb on - strand at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.601 kb on - strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.834 kb on + strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.153 kb on + strand, within GFF5706 at 80.269 kb on - strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.560 kb on + strand, within GFF5707 at 80.826 kb on + strand, within GFF5707 at 80.864 kb on - strand, within GFF5707 at 81.034 kb on + strand, within GFF5707 at 81.209 kb on + strand at 81.209 kb on + strand at 81.210 kb on - strand at 81.225 kb on + strand at 81.226 kb on - strand at 81.348 kb on - strand at 81.402 kb on - strand at 81.402 kb on - strand at 81.402 kb on - strand at 81.402 kb on - strand at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.737 kb on + strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.738 kb on - strand, within GFF5708 at 81.758 kb on + strand, within GFF5708 at 81.965 kb on + strand, within GFF5708 at 81.966 kb on - strand, within GFF5708 at 81.966 kb on - strand, within GFF5708
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 79,444 + -0.5 79,444 + -0.3 79,444 + -2.0 79,444 + -0.6 79,444 + -0.6 79,445 - +1.1 79,445 - +0.3 79,445 - -0.3 79,445 - -0.7 79,482 - -0.2 79,482 - +1.0 79,539 + GFF5705 0.14 +0.5 79,539 + GFF5705 0.14 -0.3 79,539 + GFF5705 0.14 -0.4 79,539 + GFF5705 0.14 +0.5 79,539 + GFF5705 0.14 +0.3 79,539 + GFF5705 0.14 +0.6 79,539 + GFF5705 0.14 -0.2 79,540 - GFF5705 0.15 -0.1 79,540 - GFF5705 0.15 -0.4 79,540 - GFF5705 0.15 -0.1 79,540 - GFF5705 0.15 +0.4 79,540 - GFF5705 0.15 +0.7 79,540 - GFF5705 0.15 -0.2 79,573 + GFF5705 0.20 -1.7 79,573 + GFF5705 0.20 -0.7 79,573 + GFF5705 0.20 -0.4 79,574 - GFF5705 0.20 +0.1 79,574 - GFF5705 0.20 -0.2 79,601 - GFF5705 0.25 +0.0 79,621 + GFF5705 0.29 +0.1 79,621 + GFF5705 0.29 +1.1 79,621 + GFF5705 0.29 -1.3 79,621 + GFF5705 0.29 -0.6 79,621 + GFF5705 0.29 -0.5 79,622 - GFF5705 0.29 -0.0 79,622 - GFF5705 0.29 -0.4 79,622 - GFF5705 0.29 -0.6 79,622 - GFF5705 0.29 +0.0 79,622 - GFF5705 0.29 +0.3 79,622 - GFF5705 0.29 +0.2 79,834 + GFF5705 0.66 -0.0 79,835 - GFF5705 0.66 +0.1 79,835 - GFF5705 0.66 -1.2 79,835 - GFF5705 0.66 -0.0 80,144 + GFF5706 0.71 +0.3 80,144 + GFF5706 0.71 +1.3 80,144 + GFF5706 0.71 -0.5 80,144 - GFF5706 0.71 -0.4 80,145 - GFF5706 0.72 +0.3 80,145 - GFF5706 0.72 +1.1 80,153 + GFF5706 0.77 +0.9 80,269 - -0.6 80,328 + -0.9 80,328 + -1.0 80,328 + +1.1 80,329 - +0.1 80,329 - -1.4 80,329 - -0.3 80,560 + GFF5707 0.26 +1.1 80,826 + GFF5707 0.57 +0.5 80,864 - GFF5707 0.62 +0.5 81,034 + GFF5707 0.82 -1.1 81,209 + +1.0 81,209 + -0.1 81,210 - -0.7 81,225 + +0.6 81,226 - -0.1 81,348 - +1.1 81,402 - +0.7 81,402 - -1.0 81,402 - -0.7 81,402 - -0.9 81,737 + GFF5708 0.35 +0.0 81,737 + GFF5708 0.35 -0.0 81,737 + GFF5708 0.35 +0.0 81,737 + GFF5708 0.35 -0.6 81,737 + GFF5708 0.35 -0.4 81,737 + GFF5708 0.35 +2.6 81,737 + GFF5708 0.35 -0.6 81,737 + GFF5708 0.35 -0.0 81,738 - GFF5708 0.35 -0.2 81,738 - GFF5708 0.35 -0.3 81,738 - GFF5708 0.35 +0.9 81,738 - GFF5708 0.35 +0.4 81,738 - GFF5708 0.35 -0.0 81,738 - GFF5708 0.35 +1.0 81,738 - GFF5708 0.35 +1.7 81,738 - GFF5708 0.35 +1.1 81,758 + GFF5708 0.36 -0.2 81,965 + GFF5708 0.52 -0.2 81,966 - GFF5708 0.52 -0.4 81,966 - GFF5708 0.52 -1.0
Or see this region's nucleotide sequence