Strain Fitness in Variovorax sp. SCN45 around GFF5644

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5643 and GFF5644 are separated by 109 nucleotidesGFF5644 and GFF5645 are separated by 24 nucleotidesGFF5645 and GFF5646 overlap by 4 nucleotides GFF5643 - no description, at 18,453 to 19,208 GFF5643 GFF5644 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 19,318 to 20,367 GFF5644 GFF5645 - ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates), at 20,392 to 21,201 GFF5645 GFF5646 - ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates), at 21,198 to 22,037 GFF5646 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 18.326 kb on + strandat 18.327 kb on - strandat 18.542 kb on - strand, within GFF5643at 18.576 kb on + strand, within GFF5643at 18.576 kb on + strand, within GFF5643at 18.577 kb on - strand, within GFF5643at 18.577 kb on - strand, within GFF5643at 18.577 kb on - strand, within GFF5643at 18.577 kb on - strand, within GFF5643at 18.798 kb on + strand, within GFF5643at 18.798 kb on + strand, within GFF5643at 18.799 kb on - strand, within GFF5643at 18.799 kb on - strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.804 kb on + strand, within GFF5643at 18.805 kb on - strand, within GFF5643at 18.805 kb on - strand, within GFF5643at 18.805 kb on - strand, within GFF5643at 18.881 kb on + strand, within GFF5643at 18.881 kb on + strand, within GFF5643at 18.881 kb on + strand, within GFF5643at 18.881 kb on + strand, within GFF5643at 18.881 kb on + strand, within GFF5643at 18.882 kb on - strand, within GFF5643at 18.882 kb on - strand, within GFF5643at 18.882 kb on - strand, within GFF5643at 18.882 kb on - strand, within GFF5643at 18.882 kb on - strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on + strand, within GFF5643at 18.885 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 18.886 kb on - strand, within GFF5643at 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.176 kb on + strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.177 kb on - strandat 19.178 kb on + strandat 19.178 kb on + strandat 19.178 kb on + strandat 19.179 kb on - strandat 19.179 kb on - strandat 19.179 kb on - strandat 19.436 kb on + strand, within GFF5644at 19.436 kb on + strand, within GFF5644at 19.436 kb on + strand, within GFF5644at 19.448 kb on + strand, within GFF5644at 19.448 kb on + strand, within GFF5644at 19.448 kb on + strand, within GFF5644at 19.448 kb on + strand, within GFF5644at 19.449 kb on - strand, within GFF5644at 19.449 kb on - strand, within GFF5644at 19.449 kb on - strand, within GFF5644at 19.449 kb on - strand, within GFF5644at 19.449 kb on - strand, within GFF5644at 19.592 kb on + strand, within GFF5644at 19.592 kb on + strand, within GFF5644at 19.593 kb on - strand, within GFF5644at 19.593 kb on - strand, within GFF5644at 19.593 kb on - strand, within GFF5644at 19.599 kb on - strand, within GFF5644at 19.599 kb on - strand, within GFF5644at 19.599 kb on - strand, within GFF5644at 19.599 kb on - strand, within GFF5644at 19.599 kb on - strand, within GFF5644at 19.613 kb on + strand, within GFF5644at 19.613 kb on + strand, within GFF5644at 19.730 kb on + strand, within GFF5644at 19.730 kb on + strand, within GFF5644at 19.730 kb on + strand, within GFF5644at 19.730 kb on + strand, within GFF5644at 19.730 kb on + strand, within GFF5644at 19.731 kb on - strand, within GFF5644at 19.731 kb on - strand, within GFF5644at 19.731 kb on - strand, within GFF5644at 19.731 kb on - strand, within GFF5644at 20.003 kb on + strand, within GFF5644at 20.004 kb on - strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.090 kb on + strand, within GFF5644at 20.091 kb on - strand, within GFF5644at 20.091 kb on - strand, within GFF5644at 20.091 kb on - strand, within GFF5644at 20.091 kb on - strand, within GFF5644at 20.091 kb on - strand, within GFF5644at 20.210 kb on + strand, within GFF5644at 20.210 kb on + strand, within GFF5644at 20.211 kb on - strand, within GFF5644at 20.211 kb on - strand, within GFF5644at 20.274 kb on + strandat 20.274 kb on + strandat 20.274 kb on + strandat 20.275 kb on - strandat 20.275 kb on - strandat 20.399 kb on + strandat 20.399 kb on + strandat 20.399 kb on + strandat 20.399 kb on + strandat 20.400 kb on - strandat 20.400 kb on - strandat 20.400 kb on - strandat 20.519 kb on + strand, within GFF5645at 20.519 kb on + strand, within GFF5645at 20.520 kb on - strand, within GFF5645at 20.520 kb on - strand, within GFF5645at 20.594 kb on + strand, within GFF5645at 20.642 kb on + strand, within GFF5645at 20.642 kb on + strand, within GFF5645at 20.643 kb on - strand, within GFF5645at 21.098 kb on + strand, within GFF5645

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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18,326 + +0.2
18,327 - -0.8
18,542 - GFF5643 0.12 -0.2
18,576 + GFF5643 0.16 +0.7
18,576 + GFF5643 0.16 -0.1
18,577 - GFF5643 0.16 +2.0
18,577 - GFF5643 0.16 -0.4
18,577 - GFF5643 0.16 -0.8
18,577 - GFF5643 0.16 -0.0
18,798 + GFF5643 0.46 +0.1
18,798 + GFF5643 0.46 +0.5
18,799 - GFF5643 0.46 +0.1
18,799 - GFF5643 0.46 -1.8
18,804 + GFF5643 0.46 -0.0
18,804 + GFF5643 0.46 -1.0
18,804 + GFF5643 0.46 +0.6
18,804 + GFF5643 0.46 -1.3
18,804 + GFF5643 0.46 -0.8
18,804 + GFF5643 0.46 -0.8
18,804 + GFF5643 0.46 -0.8
18,804 + GFF5643 0.46 -0.3
18,804 + GFF5643 0.46 -0.9
18,804 + GFF5643 0.46 -0.2
18,805 - GFF5643 0.47 -1.1
18,805 - GFF5643 0.47 +1.1
18,805 - GFF5643 0.47 -0.2
18,881 + GFF5643 0.57 +0.2
18,881 + GFF5643 0.57 +0.9
18,881 + GFF5643 0.57 -0.3
18,881 + GFF5643 0.57 +0.6
18,881 + GFF5643 0.57 -1.0
18,882 - GFF5643 0.57 +0.2
18,882 - GFF5643 0.57 -0.6
18,882 - GFF5643 0.57 +0.6
18,882 - GFF5643 0.57 -0.7
18,882 - GFF5643 0.57 +0.2
18,885 + GFF5643 0.57 -0.3
18,885 + GFF5643 0.57 +0.7
18,885 + GFF5643 0.57 +0.6
18,885 + GFF5643 0.57 -0.2
18,885 + GFF5643 0.57 +0.4
18,885 + GFF5643 0.57 -0.1
18,885 + GFF5643 0.57 +0.3
18,885 + GFF5643 0.57 +0.7
18,885 + GFF5643 0.57 -0.3
18,885 + GFF5643 0.57 -0.5
18,885 + GFF5643 0.57 -0.2
18,885 + GFF5643 0.57 +0.4
18,885 - GFF5643 0.57 +0.1
18,886 - GFF5643 0.57 +0.3
18,886 - GFF5643 0.57 -1.3
18,886 - GFF5643 0.57 -0.9
18,886 - GFF5643 0.57 -0.8
18,886 - GFF5643 0.57 +0.1
18,886 - GFF5643 0.57 -0.4
18,886 - GFF5643 0.57 +1.4
18,886 - GFF5643 0.57 +0.2
18,886 - GFF5643 0.57 -1.1
18,886 - GFF5643 0.57 +0.0
18,886 - GFF5643 0.57 +0.2
18,886 - GFF5643 0.57 -0.1
19,176 + -0.7
19,176 + +1.0
19,176 + -1.0
19,176 + +1.7
19,176 + -0.9
19,176 + -0.9
19,176 + +0.0
19,176 + +0.2
19,177 - +1.2
19,177 - +0.6
19,177 - +0.1
19,177 - +0.1
19,177 - +1.5
19,177 - +0.2
19,177 - +0.7
19,177 - +0.1
19,177 - +1.2
19,178 + -0.1
19,178 + -0.8
19,178 + -1.0
19,179 - +0.7
19,179 - +0.1
19,179 - -0.6
19,436 + GFF5644 0.11 +0.1
19,436 + GFF5644 0.11 +0.5
19,436 + GFF5644 0.11 -0.3
19,448 + GFF5644 0.12 -0.5
19,448 + GFF5644 0.12 -0.0
19,448 + GFF5644 0.12 -0.2
19,448 + GFF5644 0.12 -1.1
19,449 - GFF5644 0.12 -0.3
19,449 - GFF5644 0.12 -0.2
19,449 - GFF5644 0.12 -0.9
19,449 - GFF5644 0.12 +0.7
19,449 - GFF5644 0.12 -0.2
19,592 + GFF5644 0.26 +0.3
19,592 + GFF5644 0.26 +1.1
19,593 - GFF5644 0.26 -0.2
19,593 - GFF5644 0.26 +0.0
19,593 - GFF5644 0.26 +0.1
19,599 - GFF5644 0.27 -0.3
19,599 - GFF5644 0.27 -0.5
19,599 - GFF5644 0.27 +0.0
19,599 - GFF5644 0.27 -0.6
19,599 - GFF5644 0.27 -1.3
19,613 + GFF5644 0.28 -0.4
19,613 + GFF5644 0.28 -0.4
19,730 + GFF5644 0.39 +0.1
19,730 + GFF5644 0.39 +0.3
19,730 + GFF5644 0.39 -0.5
19,730 + GFF5644 0.39 -1.1
19,730 + GFF5644 0.39 -0.8
19,731 - GFF5644 0.39 -0.6
19,731 - GFF5644 0.39 +0.9
19,731 - GFF5644 0.39 +0.1
19,731 - GFF5644 0.39 -2.2
20,003 + GFF5644 0.65 +2.3
20,004 - GFF5644 0.65 -0.7
20,090 + GFF5644 0.74 +0.0
20,090 + GFF5644 0.74 -0.4
20,090 + GFF5644 0.74 -1.8
20,090 + GFF5644 0.74 -0.3
20,090 + GFF5644 0.74 -0.1
20,090 + GFF5644 0.74 -0.9
20,090 + GFF5644 0.74 +0.4
20,091 - GFF5644 0.74 +0.7
20,091 - GFF5644 0.74 +1.1
20,091 - GFF5644 0.74 -0.9
20,091 - GFF5644 0.74 -0.4
20,091 - GFF5644 0.74 -1.1
20,210 + GFF5644 0.85 -0.3
20,210 + GFF5644 0.85 +0.1
20,211 - GFF5644 0.85 -1.1
20,211 - GFF5644 0.85 -0.8
20,274 + -0.5
20,274 + +0.1
20,274 + -1.0
20,275 - +0.7
20,275 - -0.5
20,399 + +0.3
20,399 + +0.2
20,399 + -0.5
20,399 + -0.2
20,400 - -0.3
20,400 - +1.7
20,400 - -0.4
20,519 + GFF5645 0.16 +0.2
20,519 + GFF5645 0.16 +0.5
20,520 - GFF5645 0.16 -1.1
20,520 - GFF5645 0.16 +2.3
20,594 + GFF5645 0.25 -0.7
20,642 + GFF5645 0.31 +0.2
20,642 + GFF5645 0.31 -0.4
20,643 - GFF5645 0.31 -0.4
21,098 + GFF5645 0.87 +0.1

Or see this region's nucleotide sequence