Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5575 and GFF5576 are separated by 5 nucleotides GFF5576 and GFF5577 are separated by 4 nucleotides GFF5577 and GFF5578 overlap by 4 nucleotides
GFF5575 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 194,802 to 196,424
GFF5575
GFF5576 - Acyl-CoA dehydrogenase, at 196,430 to 197,623
GFF5576
GFF5577 - Enoyl-CoA hydratase (EC 4.2.1.17), at 197,628 to 198,482
GFF5577
GFF5578 - Transcriptional regulator, MarR family, at 198,479 to 198,958
GFF5578
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1
2 at 195.541 kb on + strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.560 kb on - strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.232 kb on - strand, within GFF5575 at 196.427 kb on + strand at 196.427 kb on + strand at 196.427 kb on + strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.431 kb on + strand at 196.432 kb on - strand at 196.432 kb on - strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.489 kb on - strand at 196.516 kb on - strand at 196.698 kb on + strand, within GFF5576 at 196.698 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 197.094 kb on + strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.299 kb on + strand, within GFF5576 at 197.355 kb on + strand, within GFF5576 at 197.356 kb on - strand, within GFF5576 at 197.437 kb on - strand, within GFF5576 at 197.674 kb on + strand at 198.046 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.290 kb on - strand, within GFF5577 at 198.394 kb on + strand, within GFF5577 at 198.395 kb on - strand, within GFF5577 at 198.421 kb on + strand at 198.422 kb on - strand at 198.422 kb on - strand at 198.422 kb on - strand at 198.472 kb on + strand at 198.472 kb on + strand at 198.473 kb on - strand at 198.473 kb on - strand at 198.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 195,541 + GFF5575 0.46 +0.0 195,542 - GFF5575 0.46 -0.7 195,542 - GFF5575 0.46 +0.3 195,559 + GFF5575 0.47 +1.4 195,559 + GFF5575 0.47 -0.9 195,559 + GFF5575 0.47 -1.5 195,560 - GFF5575 0.47 +1.2 195,631 + GFF5575 0.51 -0.3 195,631 + GFF5575 0.51 -0.2 195,631 + GFF5575 0.51 +1.0 195,632 - GFF5575 0.51 +0.3 195,632 - GFF5575 0.51 +0.6 196,231 + GFF5575 0.88 +1.8 196,231 + GFF5575 0.88 -0.0 196,232 - GFF5575 0.88 -0.1 196,427 + +0.4 196,427 + -1.1 196,427 + -0.4 196,428 - -0.2 196,428 - -1.0 196,428 - -0.0 196,428 - -1.1 196,431 + -0.5 196,432 - +0.3 196,432 - +0.3 196,488 + +0.2 196,488 + -0.2 196,488 + -0.0 196,489 - +0.2 196,516 - +0.6 196,698 + GFF5576 0.22 -0.4 196,698 + GFF5576 0.22 +0.7 196,702 + GFF5576 0.23 -0.2 196,702 + GFF5576 0.23 -0.3 196,702 + GFF5576 0.23 -0.7 196,702 + GFF5576 0.23 +0.8 196,703 - GFF5576 0.23 -0.6 196,703 - GFF5576 0.23 -0.8 196,703 - GFF5576 0.23 +0.5 196,703 - GFF5576 0.23 +0.2 196,703 - GFF5576 0.23 -0.6 196,703 - GFF5576 0.23 -0.9 197,094 + GFF5576 0.56 -0.2 197,095 - GFF5576 0.56 +0.8 197,095 - GFF5576 0.56 -0.1 197,095 - GFF5576 0.56 -0.8 197,095 - GFF5576 0.56 -0.6 197,263 - GFF5576 0.70 +0.2 197,263 - GFF5576 0.70 -1.2 197,299 + GFF5576 0.73 +1.5 197,355 + GFF5576 0.77 -0.4 197,356 - GFF5576 0.78 -0.7 197,437 - GFF5576 0.84 +0.8 197,674 + -0.0 198,046 + GFF5577 0.49 -0.3 198,289 + GFF5577 0.77 -0.6 198,289 + GFF5577 0.77 -1.0 198,289 + GFF5577 0.77 +1.2 198,290 - GFF5577 0.77 +1.5 198,394 + GFF5577 0.90 -0.5 198,395 - GFF5577 0.90 +0.1 198,421 + -1.0 198,422 - +0.2 198,422 - -1.2 198,422 - +0.1 198,472 + -0.2 198,472 + -0.8 198,473 - +0.2 198,473 - -0.8 198,473 - +1.2
Or see this region's nucleotide sequence