Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF551 and GFF552 are separated by 86 nucleotides GFF552 and GFF553 are separated by 26 nucleotides GFF553 and GFF554 are separated by 25 nucleotides GFF554 and GFF555 are separated by 17 nucleotides
GFF551 - Uncharacterized protein Tbd_1903, at 593,360 to 593,947
GFF551
GFF552 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 594,034 to 594,627
GFF552
GFF553 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 594,654 to 595,166
GFF553
GFF554 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 595,192 to 595,968
GFF554
GFF555 - Putative inner membrane protein, at 595,986 to 596,789
GFF555
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 593.663 kb on + strand, within GFF551 at 593.663 kb on + strand, within GFF551 at 593.663 kb on + strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.664 kb on - strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.732 kb on + strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.733 kb on - strand, within GFF551 at 593.765 kb on + strand, within GFF551 at 593.765 kb on + strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.766 kb on - strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.789 kb on + strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.790 kb on - strand, within GFF551 at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.945 kb on + strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 593.946 kb on - strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.021 kb on + strand at 594.021 kb on + strand at 594.021 kb on + strand at 594.022 kb on - strand at 594.022 kb on - strand at 594.022 kb on - strand at 594.022 kb on - strand at 594.214 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.223 kb on + strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.224 kb on - strand, within GFF552 at 594.241 kb on + strand, within GFF552 at 594.241 kb on + strand, within GFF552 at 594.241 kb on + strand, within GFF552 at 594.241 kb on + strand, within GFF552 at 594.242 kb on - strand, within GFF552 at 594.242 kb on - strand, within GFF552 at 594.242 kb on - strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.376 kb on + strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.377 kb on - strand, within GFF552 at 594.481 kb on + strand, within GFF552 at 594.482 kb on - strand, within GFF552 at 594.487 kb on + strand, within GFF552 at 594.487 kb on + strand, within GFF552 at 594.487 kb on + strand, within GFF552 at 594.487 kb on + strand, within GFF552 at 594.488 kb on - strand, within GFF552 at 594.488 kb on - strand, within GFF552 at 594.488 kb on - strand, within GFF552 at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.626 kb on - strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.690 kb on + strand at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.756 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.774 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 594.909 kb on + strand, within GFF553 at 595.966 kb on + strand at 596.061 kb on + strand at 596.061 kb on + strand at 596.061 kb on + strand at 596.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 593,663 + GFF551 0.52 -2.3 593,663 + GFF551 0.52 -0.9 593,663 + GFF551 0.52 -1.4 593,664 - GFF551 0.52 -0.6 593,664 - GFF551 0.52 +0.3 593,664 - GFF551 0.52 -1.0 593,664 - GFF551 0.52 -0.6 593,664 - GFF551 0.52 -2.8 593,664 - GFF551 0.52 -0.3 593,664 - GFF551 0.52 -1.8 593,732 + GFF551 0.63 -0.8 593,732 + GFF551 0.63 -1.2 593,732 + GFF551 0.63 +0.0 593,732 + GFF551 0.63 -0.1 593,732 + GFF551 0.63 -0.9 593,732 + GFF551 0.63 -1.2 593,732 + GFF551 0.63 -0.9 593,733 - GFF551 0.63 -1.5 593,733 - GFF551 0.63 -2.6 593,733 - GFF551 0.63 -1.3 593,733 - GFF551 0.63 -0.2 593,733 - GFF551 0.63 -1.4 593,733 - GFF551 0.63 -1.5 593,733 - GFF551 0.63 -1.3 593,733 - GFF551 0.63 -0.5 593,733 - GFF551 0.63 -0.6 593,733 - GFF551 0.63 +0.5 593,733 - GFF551 0.63 -1.6 593,733 - GFF551 0.63 -1.1 593,733 - GFF551 0.63 -2.3 593,733 - GFF551 0.63 +0.0 593,765 + GFF551 0.69 -1.0 593,765 + GFF551 0.69 +1.5 593,766 - GFF551 0.69 -0.9 593,766 - GFF551 0.69 -1.7 593,766 - GFF551 0.69 +0.2 593,766 - GFF551 0.69 -1.6 593,766 - GFF551 0.69 +0.0 593,766 - GFF551 0.69 -1.0 593,766 - GFF551 0.69 -2.2 593,789 + GFF551 0.73 -0.1 593,789 + GFF551 0.73 -1.1 593,789 + GFF551 0.73 -0.5 593,789 + GFF551 0.73 +0.9 593,789 + GFF551 0.73 -2.2 593,789 + GFF551 0.73 -0.8 593,789 + GFF551 0.73 +0.0 593,789 + GFF551 0.73 -0.7 593,789 + GFF551 0.73 -1.9 593,789 + GFF551 0.73 -0.5 593,790 - GFF551 0.73 +0.5 593,790 - GFF551 0.73 -0.3 593,790 - GFF551 0.73 +0.7 593,790 - GFF551 0.73 -1.4 593,790 - GFF551 0.73 -0.3 593,790 - GFF551 0.73 -1.1 593,790 - GFF551 0.73 -1.0 593,790 - GFF551 0.73 +0.1 593,790 - GFF551 0.73 -1.5 593,790 - GFF551 0.73 +0.3 593,945 + +0.5 593,945 + -0.5 593,945 + +0.5 593,945 + -1.0 593,945 + -1.1 593,945 + +0.2 593,945 + -0.2 593,945 + +0.5 593,945 + -0.4 593,945 + -0.5 593,945 + -0.6 593,945 + -1.5 593,945 + -0.3 593,946 - -1.1 593,946 - -0.0 593,946 - +0.9 593,946 - -0.5 593,946 - +0.1 593,946 - -0.5 593,946 - -0.9 593,946 - +0.5 593,946 - +0.8 593,946 - -0.1 593,946 - -0.9 593,946 - -0.2 593,946 - +1.5 594,015 + +0.4 594,015 + +1.1 594,015 + -0.8 594,015 + +0.3 594,015 + -0.3 594,015 + -2.4 594,015 + -0.3 594,015 + +0.7 594,015 + +0.5 594,015 + -0.1 594,016 - -0.4 594,016 - -0.1 594,016 - +0.1 594,016 - -0.0 594,016 - -0.2 594,016 - -0.5 594,016 - -0.4 594,016 - +0.3 594,021 + -0.5 594,021 + +0.3 594,021 + -0.9 594,022 - -0.3 594,022 - +0.2 594,022 - -1.8 594,022 - +0.1 594,214 + GFF552 0.30 +1.2 594,223 + GFF552 0.32 -0.6 594,223 + GFF552 0.32 +0.4 594,223 + GFF552 0.32 -0.2 594,223 + GFF552 0.32 -0.1 594,223 + GFF552 0.32 -0.5 594,223 + GFF552 0.32 -0.7 594,224 - GFF552 0.32 -1.0 594,224 - GFF552 0.32 +0.0 594,224 - GFF552 0.32 +0.2 594,224 - GFF552 0.32 -1.8 594,224 - GFF552 0.32 -0.8 594,224 - GFF552 0.32 -1.7 594,224 - GFF552 0.32 +0.1 594,224 - GFF552 0.32 +0.1 594,224 - GFF552 0.32 +0.0 594,224 - GFF552 0.32 -0.5 594,224 - GFF552 0.32 +0.5 594,224 - GFF552 0.32 +0.3 594,224 - GFF552 0.32 -0.6 594,224 - GFF552 0.32 -1.3 594,224 - GFF552 0.32 +0.9 594,224 - GFF552 0.32 -0.2 594,241 + GFF552 0.35 +0.0 594,241 + GFF552 0.35 -0.6 594,241 + GFF552 0.35 -0.0 594,241 + GFF552 0.35 -1.4 594,242 - GFF552 0.35 -0.1 594,242 - GFF552 0.35 -0.1 594,242 - GFF552 0.35 +0.3 594,376 + GFF552 0.58 +0.3 594,376 + GFF552 0.58 +0.1 594,376 + GFF552 0.58 -0.4 594,376 + GFF552 0.58 +0.3 594,376 + GFF552 0.58 +0.2 594,376 + GFF552 0.58 +0.2 594,376 + GFF552 0.58 +0.8 594,376 + GFF552 0.58 +0.1 594,376 + GFF552 0.58 -1.6 594,376 + GFF552 0.58 -0.9 594,376 + GFF552 0.58 -0.6 594,376 + GFF552 0.58 +0.2 594,376 + GFF552 0.58 -0.3 594,376 + GFF552 0.58 -0.5 594,376 + GFF552 0.58 +1.1 594,376 + GFF552 0.58 -0.1 594,376 + GFF552 0.58 -0.4 594,376 + GFF552 0.58 +0.2 594,376 + GFF552 0.58 +0.7 594,376 + GFF552 0.58 +0.7 594,376 + GFF552 0.58 +1.1 594,376 + GFF552 0.58 +1.3 594,376 + GFF552 0.58 +0.1 594,377 - GFF552 0.58 -0.8 594,377 - GFF552 0.58 +0.3 594,377 - GFF552 0.58 -0.2 594,377 - GFF552 0.58 -0.5 594,377 - GFF552 0.58 -0.2 594,377 - GFF552 0.58 +0.0 594,377 - GFF552 0.58 -0.1 594,377 - GFF552 0.58 +0.1 594,377 - GFF552 0.58 -0.2 594,377 - GFF552 0.58 +0.3 594,377 - GFF552 0.58 -1.0 594,377 - GFF552 0.58 +0.2 594,377 - GFF552 0.58 -0.1 594,377 - GFF552 0.58 +0.8 594,377 - GFF552 0.58 -0.4 594,377 - GFF552 0.58 -0.7 594,377 - GFF552 0.58 +1.5 594,377 - GFF552 0.58 -0.6 594,377 - GFF552 0.58 -0.5 594,377 - GFF552 0.58 +4.1 594,377 - GFF552 0.58 +0.5 594,377 - GFF552 0.58 -0.4 594,377 - GFF552 0.58 -1.2 594,377 - GFF552 0.58 -0.3 594,481 + GFF552 0.75 -1.5 594,482 - GFF552 0.75 -0.5 594,487 + GFF552 0.76 -0.3 594,487 + GFF552 0.76 +0.1 594,487 + GFF552 0.76 -0.2 594,487 + GFF552 0.76 +0.8 594,488 - GFF552 0.76 +0.5 594,488 - GFF552 0.76 -2.0 594,488 - GFF552 0.76 +0.3 594,626 - -0.7 594,626 - +0.2 594,626 - -1.1 594,626 - +0.0 594,626 - -1.0 594,626 - +0.6 594,626 - -0.0 594,626 - +0.9 594,626 - +0.2 594,626 - +0.6 594,626 - -0.7 594,690 + -0.1 594,690 + +0.3 594,690 + +0.8 594,690 + -0.9 594,690 + -1.0 594,690 + +0.3 594,690 + -1.3 594,756 + GFF553 0.20 -0.4 594,756 + GFF553 0.20 -0.4 594,756 + GFF553 0.20 -0.4 594,756 + GFF553 0.20 -0.5 594,756 + GFF553 0.20 -0.8 594,756 + GFF553 0.20 -0.8 594,756 + GFF553 0.20 -0.1 594,774 + GFF553 0.23 -0.2 594,774 + GFF553 0.23 -0.4 594,774 + GFF553 0.23 -0.2 594,774 + GFF553 0.23 -2.2 594,774 + GFF553 0.23 +0.4 594,774 + GFF553 0.23 +0.5 594,774 + GFF553 0.23 +0.9 594,774 + GFF553 0.23 -0.1 594,909 + GFF553 0.50 -0.2 594,909 + GFF553 0.50 -0.7 594,909 + GFF553 0.50 -0.8 594,909 + GFF553 0.50 -1.2 594,909 + GFF553 0.50 -0.8 594,909 + GFF553 0.50 -1.0 594,909 + GFF553 0.50 -1.2 594,909 + GFF553 0.50 +0.8 594,909 + GFF553 0.50 -0.2 594,909 + GFF553 0.50 -0.2 594,909 + GFF553 0.50 -1.2 594,909 + GFF553 0.50 -0.1 594,909 + GFF553 0.50 -0.7 594,909 + GFF553 0.50 +0.8 594,909 + GFF553 0.50 -0.9 594,909 + GFF553 0.50 -0.3 594,909 + GFF553 0.50 -1.6 594,909 + GFF553 0.50 +0.8 594,909 + GFF553 0.50 +0.1 594,909 + GFF553 0.50 -1.7 594,909 + GFF553 0.50 +0.5 594,909 + GFF553 0.50 -0.4 594,909 + GFF553 0.50 -0.1 594,909 + GFF553 0.50 +2.1 594,909 + GFF553 0.50 +0.2 595,966 + +0.1 596,061 + -1.4 596,061 + +0.1 596,061 + +0.2 596,061 + -0.4
Or see this region's nucleotide sequence