Strain Fitness in Variovorax sp. SCN45 around GFF5515

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
145,637	+				-0.3
145,637	+				-0.1
145,637	+				+0.1
145,638	-				+0.9
145,638	-				-0.6
145,638	-				-0.9
145,736	+		GFF5515	0.11	-1.1
145,736	+		GFF5515	0.11	-0.2
145,737	-		GFF5515	0.11	-0.1
145,811	+		GFF5515	0.16	-0.8
145,811	+		GFF5515	0.16	-0.9
145,811	+		GFF5515	0.16	-0.6
145,811	+		GFF5515	0.16	+0.2
145,812	-		GFF5515	0.16	-0.8
145,812	-		GFF5515	0.16	+0.8
146,048	+		GFF5515	0.31	-0.2
146,048	+		GFF5515	0.31	-0.2
146,048	+		GFF5515	0.31	-1.1
146,048	+		GFF5515	0.31	-0.1
146,048	+		GFF5515	0.31	+0.3
146,048	+		GFF5515	0.31	-0.5
146,048	+		GFF5515	0.31	-0.4
146,048	+		GFF5515	0.31	+0.0
146,048	+		GFF5515	0.31	-0.7
146,048	+		GFF5515	0.31	-2.0
146,048	+		GFF5515	0.31	-0.3
146,048	+		GFF5515	0.31	-0.0
146,048	+		GFF5515	0.31	-0.5
146,048	+		GFF5515	0.31	-1.6
146,048	+		GFF5515	0.31	-0.0
146,048	+		GFF5515	0.31	+0.1
146,048	+		GFF5515	0.31	-1.5
146,048	+		GFF5515	0.31	-0.5
146,048	+		GFF5515	0.31	+0.8
146,048	+		GFF5515	0.31	-0.0
146,049	-		GFF5515	0.31	+0.0
146,049	-		GFF5515	0.31	-1.4
146,049	-		GFF5515	0.31	+0.0
146,049	-		GFF5515	0.31	-0.0
146,049	-		GFF5515	0.31	-0.3
146,049	-		GFF5515	0.31	+1.6
146,049	-		GFF5515	0.31	+0.2
146,049	-		GFF5515	0.31	-1.0
146,049	-		GFF5515	0.31	-0.0
146,049	-		GFF5515	0.31	-1.5
146,049	-		GFF5515	0.31	-0.5
146,049	-		GFF5515	0.31	+0.2
146,049	-		GFF5515	0.31	-0.5
146,049	-		GFF5515	0.31	+0.2
146,049	-		GFF5515	0.31	-0.3
146,049	-		GFF5515	0.31	-1.8
146,078	+		GFF5515	0.33	-0.8
146,078	+		GFF5515	0.33	-0.3
146,078	+		GFF5515	0.33	-0.0
146,078	+		GFF5515	0.33	-0.4
146,078	+		GFF5515	0.33	-0.1
146,079	-		GFF5515	0.33	+0.3
146,079	-		GFF5515	0.33	-0.5
146,079	-		GFF5515	0.33	-1.6
146,216	+		GFF5515	0.42	-0.2
146,216	+		GFF5515	0.42	-0.2
146,216	+		GFF5515	0.42	+0.1
146,216	+		GFF5515	0.42	-0.3
146,216	+		GFF5515	0.42	-0.6
146,216	+		GFF5515	0.42	+0.8
146,216	+		GFF5515	0.42	-0.3
146,217	-		GFF5515	0.42	-0.8
146,217	-		GFF5515	0.42	-1.2
146,217	-		GFF5515	0.42	-0.2
146,217	-		GFF5515	0.42	-0.0
146,217	-		GFF5515	0.42	-1.5
146,228	+		GFF5515	0.42	-1.4
146,228	+		GFF5515	0.42	-0.0
146,228	+		GFF5515	0.42	-1.3
146,228	+		GFF5515	0.42	+1.0
146,228	+		GFF5515	0.42	-0.7
146,228	+		GFF5515	0.42	-0.2
146,228	+		GFF5515	0.42	-0.1
146,228	+		GFF5515	0.42	+0.2
146,228	+		GFF5515	0.42	-0.3
146,228	+		GFF5515	0.42	-0.4
146,228	+		GFF5515	0.42	-1.0
146,229	-		GFF5515	0.42	-0.4
146,229	-		GFF5515	0.42	+0.0
146,229	-		GFF5515	0.42	-0.6
146,229	-		GFF5515	0.42	+0.5
146,229	-		GFF5515	0.42	+1.3
146,229	-		GFF5515	0.42	-0.8
146,229	-		GFF5515	0.42	-0.2
146,229	-		GFF5515	0.42	-0.3
146,229	-		GFF5515	0.42	-0.1
146,229	-		GFF5515	0.42	-0.1
146,229	-		GFF5515	0.42	-0.8
146,229	-		GFF5515	0.42	-0.0
146,229	-		GFF5515	0.42	-0.4
146,229	-		GFF5515	0.42	-0.1
146,229	-		GFF5515	0.42	-0.5
146,249	+		GFF5515	0.44	-0.9
146,249	+		GFF5515	0.44	-0.3
146,249	+		GFF5515	0.44	-0.1
146,249	+		GFF5515	0.44	-0.0
146,249	+		GFF5515	0.44	-0.2
146,249	+		GFF5515	0.44	-0.6
146,249	+		GFF5515	0.44	-0.4
146,249	+		GFF5515	0.44	-1.7
146,249	+		GFF5515	0.44	+0.4
146,249	+		GFF5515	0.44	-0.6
146,249	+		GFF5515	0.44	-0.7
146,250	-		GFF5515	0.44	+0.1
146,250	-		GFF5515	0.44	-0.4
146,250	-		GFF5515	0.44	+0.2
146,250	-		GFF5515	0.44	+0.8
146,250	-		GFF5515	0.44	-0.2
146,250	-		GFF5515	0.44	-0.1
146,250	-		GFF5515	0.44	-0.6
146,250	-		GFF5515	0.44	-1.0
146,250	-		GFF5515	0.44	-0.5
146,250	-		GFF5515	0.44	-0.3
146,250	-		GFF5515	0.44	-0.1
146,250	-		GFF5515	0.44	-0.5
146,250	-		GFF5515	0.44	-1.7
146,250	-		GFF5515	0.44	-0.0
146,336	+		GFF5515	0.49	-0.3
146,336	+		GFF5515	0.49	-0.3
146,336	+		GFF5515	0.49	-0.3
146,336	+		GFF5515	0.49	-0.6
146,336	+		GFF5515	0.49	-0.5
146,336	+		GFF5515	0.49	-0.3
146,336	+		GFF5515	0.49	-0.9
146,336	+		GFF5515	0.49	+0.2
146,336	+		GFF5515	0.49	-0.4
146,336	+		GFF5515	0.49	+0.4
146,336	+		GFF5515	0.49	-1.1
146,336	+		GFF5515	0.49	-0.5
146,336	+		GFF5515	0.49	+1.3
146,336	+		GFF5515	0.49	-0.5
146,336	+		GFF5515	0.49	+0.1
146,336	+		GFF5515	0.49	-1.6
146,337	-		GFF5515	0.49	-1.8
146,337	-		GFF5515	0.49	+1.8
146,337	-		GFF5515	0.49	-0.2
146,337	-		GFF5515	0.49	-0.3
146,337	-		GFF5515	0.49	-0.2
146,337	-		GFF5515	0.49	+0.1
146,337	-		GFF5515	0.49	+0.8
146,337	-		GFF5515	0.49	-0.8
146,337	-		GFF5515	0.49	-0.2
146,337	-		GFF5515	0.49	-0.5
146,337	-		GFF5515	0.49	+0.5
146,337	-		GFF5515	0.49	-0.0
146,337	-		GFF5515	0.49	+1.8
146,337	-		GFF5515	0.49	-0.2
146,337	-		GFF5515	0.49	-0.5
146,337	-		GFF5515	0.49	-1.0
146,337	-		GFF5515	0.49	+0.6
146,337	-		GFF5515	0.49	-0.7
146,438	+		GFF5515	0.56	-2.3
146,438	+		GFF5515	0.56	+0.4
146,438	+		GFF5515	0.56	-0.3
146,438	+		GFF5515	0.56	-0.1
146,439	-		GFF5515	0.56	+0.0
146,439	-		GFF5515	0.56	-0.3
146,439	-		GFF5515	0.56	+0.5
146,439	-		GFF5515	0.56	-1.5
146,439	-		GFF5515	0.56	+0.1
146,439	-		GFF5515	0.56	-0.8
146,439	-		GFF5515	0.56	+0.2
146,439	-		GFF5515	0.56	-0.4
146,439	-		GFF5515	0.56	+0.7
146,439	-		GFF5515	0.56	-0.5
146,439	-		GFF5515	0.56	-0.2
146,453	+		GFF5515	0.57	+0.1
146,564	+		GFF5515	0.64	+0.3
146,564	+		GFF5515	0.64	-0.7
146,564	+		GFF5515	0.64	-0.2
146,564	+		GFF5515	0.64	-0.8
146,564	+		GFF5515	0.64	+0.1
146,564	+		GFF5515	0.64	-0.1
146,564	+		GFF5515	0.64	-0.3
146,564	+		GFF5515	0.64	+0.5
146,565	-		GFF5515	0.64	+0.5
146,565	-		GFF5515	0.64	-1.5
146,565	-		GFF5515	0.64	+0.4
146,565	-		GFF5515	0.64	-0.1
146,565	-		GFF5515	0.64	-1.4
146,573	+		GFF5515	0.64	-0.2
146,574	-		GFF5515	0.64	-0.3
146,594	+		GFF5515	0.66	-0.4
146,594	+		GFF5515	0.66	+0.4
146,594	+		GFF5515	0.66	+0.2
146,595	-		GFF5515	0.66	-0.2
146,603	+		GFF5515	0.66	-0.0
146,603	+		GFF5515	0.66	+0.0
146,603	+		GFF5515	0.66	+0.2
146,603	+		GFF5515	0.66	-0.0
146,603	+		GFF5515	0.66	-0.7
146,603	+		GFF5515	0.66	-0.3
146,604	-		GFF5515	0.66	-1.8
146,604	-		GFF5515	0.66	-0.7
146,604	-		GFF5515	0.66	-0.6
146,604	-		GFF5515	0.66	+0.9
146,604	-		GFF5515	0.66	+0.0
146,604	-		GFF5515	0.66	-0.8
146,604	-		GFF5515	0.66	+0.8
146,708	+		GFF5515	0.73	+0.4
146,708	+		GFF5515	0.73	+0.8
146,708	+		GFF5515	0.73	+0.0
146,708	+		GFF5515	0.73	-0.8
146,708	+		GFF5515	0.73	-1.1
146,708	+		GFF5515	0.73	+0.7
146,708	+		GFF5515	0.73	-0.6
146,708	+		GFF5515	0.73	-0.8
146,708	+		GFF5515	0.73	-0.5
146,708	+		GFF5515	0.73	+0.1
146,708	+		GFF5515	0.73	-0.9
146,708	+		GFF5515	0.73	+0.9
146,708	+		GFF5515	0.73	-0.4
146,708	+		GFF5515	0.73	-0.9
146,708	+		GFF5515	0.73	+0.7
146,708	+		GFF5515	0.73	-0.9
146,709	-		GFF5515	0.73	-0.8
146,709	-		GFF5515	0.73	-0.1
146,709	-		GFF5515	0.73	-0.8
146,709	-		GFF5515	0.73	+0.6
146,709	-		GFF5515	0.73	-0.3
146,709	-		GFF5515	0.73	+0.3
146,709	-		GFF5515	0.73	-0.5
146,709	-		GFF5515	0.73	+0.4
146,709	-		GFF5515	0.73	-0.9
146,709	-		GFF5515	0.73	-0.9
146,709	-		GFF5515	0.73	+0.8
146,709	-		GFF5515	0.73	+0.7
146,738	+		GFF5515	0.75	-1.0
146,738	+		GFF5515	0.75	-0.6
146,738	+		GFF5515	0.75	-0.7
146,738	+		GFF5515	0.75	+1.8
146,738	+		GFF5515	0.75	+1.0
146,738	+		GFF5515	0.75	-0.2
146,738	+		GFF5515	0.75	-1.3
146,739	-		GFF5515	0.75	-1.2
146,739	-		GFF5515	0.75	+0.0
146,739	-		GFF5515	0.75	-0.1
146,739	-		GFF5515	0.75	-0.6
146,739	-		GFF5515	0.75	-0.5
146,739	-		GFF5515	0.75	+0.8
146,739	-		GFF5515	0.75	-0.4
146,739	-		GFF5515	0.75	-2.0
146,739	-		GFF5515	0.75	-0.3
146,739	-		GFF5515	0.75	-0.4
146,739	-		GFF5515	0.75	-0.5
146,843	+		GFF5515	0.81	-0.5
146,843	+		GFF5515	0.81	-0.8
146,844	-		GFF5515	0.81	+0.4
146,844	-		GFF5515	0.81	-0.5
146,844	-		GFF5515	0.81	-0.5
146,844	-		GFF5515	0.81	-0.3
146,844	-		GFF5515	0.81	+0.1
146,844	-		GFF5515	0.81	-1.2
146,852	+		GFF5515	0.82	-1.5
146,852	+		GFF5515	0.82	-0.1
146,852	+		GFF5515	0.82	+0.3
146,852	+		GFF5515	0.82	-0.4
146,852	+		GFF5515	0.82	-0.0
146,852	+		GFF5515	0.82	+0.4
146,852	+		GFF5515	0.82	-0.7
146,852	+		GFF5515	0.82	-0.0
146,852	+		GFF5515	0.82	-0.2
146,852	+		GFF5515	0.82	-0.3
146,852	+		GFF5515	0.82	+0.2
146,852	+		GFF5515	0.82	-0.1
146,852	+		GFF5515	0.82	-0.0
146,852	+		GFF5515	0.82	+0.5
146,852	+		GFF5515	0.82	-0.5
146,852	+		GFF5515	0.82	-1.0
146,852	+		GFF5515	0.82	-0.0
146,852	+		GFF5515	0.82	-0.7
146,852	+		GFF5515	0.82	-0.0
146,853	+		GFF5515	0.82	-0.5
146,853	-		GFF5515	0.82	-0.3
146,853	-		GFF5515	0.82	+1.2
146,853	-		GFF5515	0.82	-0.3
146,853	-		GFF5515	0.82	-1.2
146,853	-		GFF5515	0.82	+1.8
146,853	-		GFF5515	0.82	-0.3
146,853	-		GFF5515	0.82	-0.5
146,853	-		GFF5515	0.82	+1.0
146,853	-		GFF5515	0.82	-0.2
147,211	+				-0.5
147,258	-				-0.2
147,270	+				+0.4
147,270	+				-0.8
147,271	-				-0.2
147,271	-				-0.4
147,271	-				-1.0
147,280	+				-0.1
147,280	+				+0.1
147,280	+				-0.6
147,280	+				-0.8
147,280	+				-0.2
147,280	+				+0.2
147,280	+				+0.4
147,281	-				+0.4
147,281	-				+0.8
147,281	-				-0.5
147,281	-				+0.8
147,281	-				-1.0
147,281	-				+0.8
147,281	-				+2.1
147,386	+				+0.3
147,386	+				+0.5
147,386	+				-0.1
147,386	+				-0.0
147,386	+				-0.2
147,386	+				-1.7
147,387	-				+0.2
147,387	-				-0.8
147,387	-				-0.8
147,387	-				-0.0
147,387	-				+1.3
147,773	+		GFF5516	0.33	-0.5
147,773	+		GFF5516	0.33	-0.1
147,773	+		GFF5516	0.33	-0.2
147,773	+		GFF5516	0.33	-0.3
147,773	+		GFF5516	0.33	-1.8
147,773	+		GFF5516	0.33	-0.7
147,773	+		GFF5516	0.33	-0.3
147,774	-		GFF5516	0.33	-0.4
147,774	-		GFF5516	0.33	+0.0
147,774	-		GFF5516	0.33	+0.2
147,774	-		GFF5516	0.33	-0.3
147,774	-		GFF5516	0.33	+0.1
147,774	-		GFF5516	0.33	+1.6
147,774	-		GFF5516	0.33	+0.8
147,774	-		GFF5516	0.33	-0.7
147,774	-		GFF5516	0.33	+0.2
147,774	-		GFF5516	0.33	+0.4
147,774	-		GFF5516	0.33	-0.4
147,923	+		GFF5516	0.43	-0.2
147,923	+		GFF5516	0.43	-1.1
147,923	+		GFF5516	0.43	-0.5
147,923	+		GFF5516	0.43	-0.8
147,923	+		GFF5516	0.43	+1.8
147,923	+		GFF5516	0.43	-0.6
147,923	+		GFF5516	0.43	+0.3
147,923	+		GFF5516	0.43	+0.3
147,923	+		GFF5516	0.43	-1.0
147,923	+		GFF5516	0.43	-0.6
147,923	+		GFF5516	0.43	-0.5
147,923	+		GFF5516	0.43	-2.3
147,923	+		GFF5516	0.43	-0.5
147,923	+		GFF5516	0.43	-0.4
147,923	+		GFF5516	0.43	+0.6
147,924	-		GFF5516	0.43	+0.0
147,924	-		GFF5516	0.43	+0.8
147,924	-		GFF5516	0.43	+0.7
147,924	-		GFF5516	0.43	-0.8
147,924	-		GFF5516	0.43	-0.2
147,924	-		GFF5516	0.43	+0.7
147,924	-		GFF5516	0.43	-0.5
147,924	-		GFF5516	0.43	+0.3
147,924	-		GFF5516	0.43	-0.4
147,924	-		GFF5516	0.43	-0.3
147,924	-		GFF5516	0.43	-0.4
147,941	+		GFF5516	0.45	-0.6
147,941	+		GFF5516	0.45	-0.9
147,941	+		GFF5516	0.45	-1.4
147,942	-		GFF5516	0.45	+0.5
147,942	-		GFF5516	0.45	-0.1
147,942	-		GFF5516	0.45	-0.4
147,942	-		GFF5516	0.45	-0.8
147,942	-		GFF5516	0.45	-1.8
147,942	-		GFF5516	0.45	-0.3
147,942	-		GFF5516	0.45	+0.5
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	-0.5
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	-0.3
148,109	+		GFF5516	0.56	-0.5
148,109	+		GFF5516	0.56	-0.5
148,109	+		GFF5516	0.56	-0.8
148,109	+		GFF5516	0.56	+0.1
148,109	+		GFF5516	0.56	+0.1
148,110	-		GFF5516	0.56	-0.0
148,110	-		GFF5516	0.56	-0.6
148,110	-		GFF5516	0.56	-1.7
148,110	-		GFF5516	0.56	-0.6
148,110	-		GFF5516	0.56	+0.2
148,110	-		GFF5516	0.56	-0.5
148,110	-		GFF5516	0.56	+0.3
148,110	-		GFF5516	0.56	-0.3
148,110	-		GFF5516	0.56	-0.9
148,110	-		GFF5516	0.56	-0.9
148,110	-		GFF5516	0.56	-0.1
148,110	-		GFF5516	0.56	-0.3
148,110	-		GFF5516	0.56	+1.0
148,110	-		GFF5516	0.56	-0.1